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Table 1 Horizontal gene transfers from bacteria to chromalveolates

From: Horizontal gene transfer in chromalveolates

1

2

3

4

5

6

Domain (Pfam)

Protein family [Function]

Accession number

Number unigenes

Best Hit

Phylogeny

MVIM

Predicted dehydrogenase

EF540335

7

1e-57

Fig. 2

WECE

Pyridoxal phosphate dependent aminotransferase [Cell envelope biogenesis, outer membrane]

EF540335

EF540337

12

2e-100

Fig. 2

Epimerase

NAD dependent epimerase/dehydratase [Cell envelope biogenesis, outer membrane]

EF540339

2

1e-56

Fig. 3

CAS-like

Clavaminic acid synthetase [Biosynthesis of clavulanic acid]

EF540323

EF540325

3

1e-53

Fig. 4

MQO

Malate-quinone oxidoreductase [Energy metabolism]

EF540331

EF540333

2

1e-98

Fig. 5

NADP-IDH

Monomeric NADP(+)-dependent isocitrate dehydrogenase. [Energy metabolism]

EF540327

EF540328

2

1e-162

Fig. 6

Fe-ADH

Iron-containing alcohol dehydrogenase [Energy metabolism]

EF540326

1

2e-97

Additional file 1

PutA

NAD-dependent aldehyde dehydrogenases [Energy metabolism]

EF540338

2

2e-120

Additional file 1

PBPb

Substrate-bound, membrane-associated, periplasmic binding protein [Substrate transport]

EF540334

1

2e-26

Additional file 1

SIR2

Silent information regulator 2 [Gene silencing, DNA repair]

EF540336

2

5e-39

Additional file 1

AslA

Arylsulfatase A [Substrate transport]

EF540322

1

1e-70

Additional file 1*

COG3129

SAM-dependent methyltransferase

EF540332

1

1e-23

Additional file 1*

ATS1

Alpha-tubulin suppressor [Cell division and chromosome partitioning, cytoskeleton]

EF540324

5

8e-52

Additional file 1*

PdxA

Pyridoxal phosphate biosynthetic protein PdxA [Amino acid metabolism]

EF540340

1

4e-54

Additional file 1*

COG3618

Metal-dependent hydrolase of the TIM-barrel fold

EF540329

2

1e-55

Additional file 1*

COG3022

Hypothetical [unknown]

EF540330

1

4e-26

Additional file 1*

  1. 1. The Pfam domain designation [29, 30]. 2. Confirmed or proposed function of the prokaryotic homologs is given. 3. GenBank accession number. 4. Numbers of unigenes encoding particular protein identified in the Karenia brevis EST data are given. Only one copy of gene was submitted into the GenBank. All gene copies can be found at [111]. 5. E-values for the best bacterial hit from the GenBank nonredundant database. 6. Phylogenetic trees for all proteins present in dinoflagellates and at least one other eukaryotic lineage (BLASTp e-value ≤ 10-10).
  2. *The protein was found only in dinoflagellates and prokaryotes.
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BMC Ecology and Evolution

ISSN: 2730-7182

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