Model | ℓ | ω0 | Parameters | Sig. | Positive Sites |
---|---|---|---|---|---|
Lineage-specific | Â | Â | Â | Â | Â |
   M0: one ratio... | -9102.48 | 1.28 | = ω 0 | P < 0.01 |  |
   M0: one ratio-C | -9106.69 | 1 | ω 0 constrained to 1 |  |  |
   M0: one ratio-2 | -5153.65 | 1.16 | = ω 0 |  |  |
   PD-PS............. | -5153.55 |  | ω PD = 1.22, ω PS = 1.12 | n.s. |  |
   Free ratio......... | -8980.48 |  | see Figure 1 | P << 0.001 |  |
Site-specific | Â | Â | Â | Â | Â |
   M1: neutral....... | -8909.37 | 0.852 | p0 = 0.148, ω0 = 0 |  |  |
 |  |  | p1 = 0.582, ω2 = 1 |  |  |
   M2: selection... | -8600.95 | 2.11 | p0 = 0.145, ω0 = 0 | P << 0.001 | 36 (PP ≥ 0.99) |
 |  |  | p1 = 0.5, ω2 = 1 |  | 4 (0.95 ≤ PP < 0.99) |
 |  |  | p2 = 0.355, ω 2 = 4.53 |  | 10 (PP < 0.95) |
   M3: discrete..... | -8540.48 | 1.69 | p0 = 0.343, ω0 = 0.115 | P << 0.001 | 74 (PP ≥ 0.99) |
 |  |  | p1 = 0.435, ω 2 = 1.43 |  | 7 (0.95 ≤ PP < 0.99) |
 |  |  | p2 = 0.222, ω 2 = 4.63 |  | 4 (PP < 0.95) |
   M7: beta........... | -8725.96 | 0.594 | p = 0.266, q= 0.182 |  |  |
   M8: beta&ω...... | -8544.24 | 1.4 | p0 = 0.70, p = 0.276, q = 0.228 | P << 0.001 | 28 (PP ≥ 0.99) |
 |  |  | p1 = 0.297, ω = 3.41 |  | 2 (0.95 ≤ PP < 0.99) |
 |  |  |  |  | 9 (PP < 0.95) |