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Table 3 Cross-validation for the simulated datasets (α = 0.5)

From: Evaluation of the models handling heterotachy in phylogenetic inference

 

One component (homotachy)

Two-component

Three-component

Four-component

Covarion

α = 0.5

     

Ď„ = 0.2

0

10.5 ± 5.5

18.6 ± 7.9

20.6 ± 10.9

0.8 ± 2.4

Ď„ = 0.4

2.0 ± 8.7

0

4.7 ± 9.4

14.7 ± 8.7

2.0 ± 8.6

Ď„ = 0.6

84.5 ± 12.4

0

10.0 ± 7.2

21.9 ± 10.1

85.2 ± 12.9

Ď„ = 0.8

359.5 ± 30.0

0

8.1 ± 6.5

15.9 ± 9.3

359.6 ± 29.4

α = 1

     

Ď„ = 0.2

0

9.6 ± 4.3

18.5 ± 9.1

23.8 ± 9.0

0.6 ± 1.9

Ď„ = 0.4

13.0 ± 5.9

0

10.6 ± 4.4

17.3 ± 8.1

14.6 ± 5.3

Ď„ = 0.6

101.4 ± 8.6

0

11.0 ± 6.0

18.1 ± 9.2

101.7 ± 8.4

Ď„ = 0.8

472.0 ± 13.9

0

10.2 ± 5.5

13.6 ± 5.6

453.4 ± 14.0

α = 1.5

     

Ď„ = 0.2

0

11.7 ± 6.3

7.4 ± 4.4

18.4 ± 12.1

0.7 ± 1.8

Ď„ = 0.4

36.6 ± 5.9

0

12.1 ± 7.1

18.9 ± 9.2

34.9 ± 5.4

Ď„ = 0.6

136.7 ± 12.8

0

7.7 ± 6.3

15.9 ± 9.6

135.3 ± 12.7

Ď„ = 0.8

505.6 ± 23.8

0

10.8 ± 7.6

19.1 ± 8.8

490.9 ± 24.5

α = 2

     

Ď„ = 0.2

0

11.2 ± 5.3

17.7 ± 10.4

26.1 ± 9.9

1.7 ± 2.4

Ď„ = 0.4

37.5 ± 17.5

0

9.3 ± 11.6

18.6 ± 15.7

39.2 ± 18.5

Ď„ = 0.6

173.9 ± 12.6

0

10.6 ± 4.6

12.4 ± 5.3

169.5 ± 12.0

Ď„ = 0.8

596.1 ± 22.2

0

8.0 ± 1.5

15.1 ± 6.9

588.0 ± 23.0

  1. The mean (± SD) of the difference between the CV log likelihood of the current model and the model with the highest CV log likelihood is given. Five random runs were performed for this two-fold CV.