Table 1 Homologs of predicted products of ORFs in the LPS locus of Xoo strain BXO8
ORF (product size [aa]) | Putative function | Homologous protein (size [aa]) | Organism | Accession no. | I/S (E value)a |
|---|---|---|---|---|---|
ORF1 (260) | ABC-2 type transporter | ABC transporter permease (260) | Xac strain 306 | AAM38444 | 70/84 (2e-85) |
ORF2 (410) | ATP binding | ATP binding protein (409) | Xac strain 306 | AAM38443 | 74/84 (4e-172) |
ORF3 (386) | Unknown | Hypothetical protein (563) | Xac strain 306 | AE008923 | 51/65 (5e-92) |
ORF4 (611) | O-antigen biosynthesis | O-antigen biosynthesis protein (614) | Xac strain 306 | AAM38441 | 66/79 (0) |
ORF5 (417) | glycosyl transferase | Hypothetical protein (419) | Xac strain 306 | AE008923 | 61/73 (5e-141) |
ORF6 (311) | Transposase | IS1404 (349) | Xoo KACC10331 | YP_202804 | 97/98 (4e-145) |
ORF7 (158) | Transposase | IS1478 (158) | Xoo KACC10331 | YP_201135 | 89/92 (1e-76) |
ORF8 (521) | unknown | Hypothetical protein (581) | Xac strain 306 | AAM38439 | 44/61 (3e-102) |
ORF9 (136) | glycosyltransferase | Hypothetical protein (132) | Xac strain 306 | AAM38438 | 50/70 (2e-33) |
ORF10 (452) | Unknown | Hypothetical protein (746) | Xac strain 306 | AAM38435 | 32/50 (7e-13) |
ORF11 (430) | protoporphyrinogen oxidase | phytoene desaturase (428) | Xac strain 306 | AAM38437 | 78/88 (0) |
ORF12 (312) | epimerase | NAD dependent epimerase (314) | Xac strain 306 | AAM38436 | 81/89 (4e-148) |
ORF13 (223) | methyltransferase | Methyltransferase type 11 (229) | Nocardioides sp. JS614 | ABL82494 | 48/64 (7e-52) |
ORF14 (242) | dehydrogenase | Short chain dehydrogenase (242) | Xac strain 306 | AAM38434 | 90/95 (3e-109) |
ORF15 (433) | oxidoreductase | Putative oxidoreductase (433) | Xac strain 306 | AAM38433 | 93/94 (0) |
ORF16 (481) | prenyltransferase | Integral membrane protein (481) | Xac strain 306 | AAM38432 | 95/97 (0) |
ORF17 (328) | unknown function | Integral membrane protein (292) | Xac strain 306 | AAM38431 | 90/93 (4e-126) |