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Figure 5 | BMC Evolutionary Biology

Figure 5

From: FlowerPower: clustering proteins into domain architecture classes for phylogenomic inference of protein function

Figure 5

PFAM domain architecture of the seed dataset used to evaluate BLAST, PSI-BLAST, T2K and FlowerPower. Sequences were selected based on the following criteria: each sequence had to contain recognizable PFAM domains (based on the PFAM gathering threshold), no undefined regions of >80 amino acids (i.e., a region with no PFAM match), and each PFAM domain was required to match a 3D structure classified by the SCOP database. For details of the seed sequence domain architectures see Table 1.

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