Table 5 BLAST matches in the other genomes and databases (E-value < 0.01)
Genome or database | Number of hits | fraction |
|---|---|---|
Human EST library | 12,021 | 70% |
Human cDNA library | 7,546 | 44% |
Chimpanzee (Pan troglodytes) | 15,757 | 92% |
Macaque cDNA library | 5,955 | 35% |
Mouse genome | 8,011 | 47% |
Mouse EST library | 7,546 | 44% |
Rat genome | 7,691 | 45% |
* Rodents: mouse ∪ rat | 9,184 | 53% |
Dog (Canis familiaris,) partial genome | 7,924 | 46% |
Chicken (Gallus gallus) | 3,600 | 21% |
Frog (Xenopus tropicalis) | 2,279 | 13% |
Japanese pufferfish (Takifugu rubripes) | 2,254 | 13% |
Green spotted pufferfish (Tetraodon nigroviridis) | 2,069 | 12% |
** Pufferfish: Takifugu rubripes ∪ Tetraodon nigroviridis | 2867 | 17% |
Sea squirt (Ciona intestinalis) | 607 | 4% |
Noncoding RNA Databases | ||
Rfam | 252 | 1% |
RNAdb | 1,995 | 12% |
mirBase | 138 | 1% |
NONCODE | 379 | 2% |
*** Rfam ∪ RNAdb ∪ mirBase ∪ NONCODE | 2,637 | 15% |
Total number of TARs reported by Bertone et al. | 17,198 |