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Table 5 Taxonomic sampling and accession numbers of the four nuclear genes.

From: Molecular phylogeny and divergence times of Malagasy tenrecs: Influence of data partitioning and taxon sampling on dating analyses

 

Species

ADRA2B

AR

GHR

vWF

EUTHERIA

     

RODENTIA

     

   Muridae

Mus musculus

L00979

NM_013476

M33324

AJ238390

   Caviidae

Cavia porcellus

AJ271336

AJ893531

AF238492

AJ224663

   Sciuridae

Marmota/Sciurus 1

AJ315942

AM905334*

AF332032

J224671

LAGOMORPHA

     

   Leporidae

Oryctolagus cuniculus

Y15946

AJ893533

AF015252

U31618

 

Lepus sp. 2

AJ427254

AJ893534

AF332016

AJ224669

   Ochotonidae

Ochotona princeps

AJ427253

AJ893535

AF332015

AJ224672

PRIMATES

     

   Lemuridae

Eulemur sp.3

AJ891059

AJ893537

AF540627

AJ891087

   Hominidae

Homo sapiens

M34041

M27423

X06562

X06828

SCANDENTIA

Tupaia sp. 4

AJ251187

AM905335*

AF540643

U31624

DERMOPTERA

Cynocephalus variegatus

AJ251182

AM905340*

AF540625

U31606

CARNIVORA

     

   Canidae

Canis familiaris

AJ891051

AF197950

AF133835

L16903

   Felidae

Cryptoprocta ferox

AJ891056

AJ893549

AY928733

AJ891085

PERISSODACTYLA

     

   Rhinocerotidae

Ceratotherium/Diceros 5

AJ251184

AJ893553

AM905343*

U31604

   Equidae

Equus sp. 6

Y15945

AJ893554

AF392878

U31610

CETARTIODACTYLA

     

   Camelidae

Lama sp. 7

AJ315941

AJ893555

AM905349*

AF108835

   Suidae

Sus scrofa

AJ251177

AF161717

X54429

S78431

   Physeteridae

Physeter catodon

AJ427417

AJ893556

AM905344*

AF108834

CHIROPTERA

Cynopterus/Pteropus 8

AJ251181

AM905339*

AF392893

U31605

EULIPOTYPHLA

Erinaceus/Crocidura 9

Y12521

AJ893557

AF392882

AY057834

XENARTHRA

Myrmecophaga/Cyclopes 10

MTR427373

AJ893558

AF392875

MTR278157

SIRENIA

Trichechus/Dugong 11

AJ251109

AJ893559

AF392891

U31608

PROBOSCIDEA

Elephas maximus

Y12525

AJ893560

AF332013

U31611

HYRACOIDEA

Procavia capensis

Y12523

AJ893561

AF392896

U31619

TUBULIDENTATA

Orycteropus afer

Y12522

AJ893563

AF392892

U31617

MACROSCELIDEA

Macroscelides proboscideus

Y12524

AM905337*

AF332014

AY310893

AFROSORICIDA

     

   Chrysochloridae

Amblysomus/Chrysospalax 12

Y12526

AJ893562

AF392877

U97534

   Tenrecidae

     

Tenrecinae

Setifer setosus

AJ891077

AJ893566

DQ202292

AJ891098

 

Echinops telfairi

Y17692

AJ893565

AF392889

AF076478

 

Tenrec ecaudatus

AJ251108

AJ893564

AF392890

AF390536

 

Hemicentetes semispinosus

AJ891065

AJ893567

DQ202288

AJ891093

   Oryzoryctinae

Oryzorictes hova

AJ891074

AJ893568

AF392886

AJ891097

 

Microgale talazaci

-

-

AF392885

-

 

Microgale brevicaudata

AJ891072

AJ893569

AM905345*

AM905350*

 

Microgale cf. parvula

AM905341*

AM905336*

AM905346*

AM905351*

 

Limnogale mergulus

AJ891069

AJ893570

DQ202289

AJ891096

   Geogalinae

Geogale aurita

AM905342*

AM905338*

AM905347*

AM905352*

   Potamogalinae

Micropotamogale lamottei

AJ251107

AJ893571

DQ202290

AF390538

MARSUPIALIA

     

DIDELPHIMORPHIA

Didelphis/Monodelphis 13

Y15943

AJ893572

AF238491

AF226848

DIPROTODONTIA

Macropus sp. 14

AJ251183

AJ893573

AM905348*

AJ224670

  1. 1 Sciurus vulgaris (ADRA2B, AR) combined with S. niger (GHR) and Marmota monax (vWF)
  2. 2 Lepus crawshayi (ADRA2B, AR, vWF) combined with L. capensis (GHR)
  3. 3 Eulemur fulvus fulvus (ADRA2B, AR, vWF) combined with E. coronatus (GHR)
  4. 4 Tupaia tana (ADRA2B, AR, GHR) combined with T. glis (VWF)
  5. 5 Diceros bicornis (ADRA2B, AR, GHR) combined with Ceratotherium simum (vWF);
  6. 6 Equus caballus (ADRA2B, AR, GHR) combined with E. asinus (vWF)
  7. 7 Lama pacos (ADRA2B, AR, GHR) combined with L. glama (vWF)
  8. 8Cynopterus sphinx (ADRA2B, AR, vWF) combined with Pteropus vampyrus (GHR)
  9. 9 Erinaceus europaeus (ADRA2B, AR, GHR) combined with Crocidura russula (vWF)
  10. 10 Myrmecophaga tridactyla (ADRA2B, vWF, GHR) combined with Cyclopes didactylus (AR)
  11. 11 Trichechus manatus (ADRA2B, AR, GHR) combined with Dugong dugon (vWF)
  12. 12 Amblysomus hottentotus (ADRA2B, AR, vWF) combined with Chrysospalax trevelyani (GHR)
  13. 13 Didelphis marsupialis (ADRA2B, AR) combined with D. virginiana (vWF) and Monodelphis domestica (GHR)
  14. 14 Macropus rufus (ADRA2B, AR, GHR) combined with M. giganteus (vWF)
  15. Upperscore numbers (1–14) refer to taxa for which sequences from different species were combined in the concatenated analysis. * New sequences from the present study. The full alignment is available from Treebase (accession number M3679).
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BMC Ecology and Evolution

ISSN: 2730-7182

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