BMC Ecology and Evolution

Table 3 Relative codon bias

From: Consistent and contrasting properties of lineage-specific genes in the apicomplexan parasites Plasmodium and Theileria

A.
	All	Pf1	Pf2	Pf3	Pf4	Pf5	Pf6
All	*	0.037	0.026	0.015	0.019	0.015	0.087
Pf1	0.040	*	0.030	0.033	0.045	0.047	0.115
Pf2	0.026	0.028	*	0.017	0.037	0.032	0.107
Pf3	0.015	0.031	0.017	*	0.027	0.020	0.102
Pf4	0.019	0.042	0.037	0.026	*	0.021	0.094
Pf5	0.014	0.042	0.031	0.019	0.020	*	0.095
Pf6	0.091	0.115	0.110	0.104	0.101	0.103	*
B.
	All	Ta1	Ta2	Ta3	Ta4	Ta5	Ta6
All	*	0.055	0.084	0.032	0.034	0.043	0.159
Ta1	0.055	*	0.037	0.040	0.077	0.098	0.206
Ta2	0.084	0.037	*	0.064	0.105	0.127	0.231
Ta3	0.032	0.040	0.064	*	0.046	0.068	0.187
Ta4	0.034	0.078	0.106	0.047	*	0.040	0.162
Ta5	0.043	0.098	0.127	0.068	0.040	*	0.130
Ta6	0.165	0.215	0.239	0.196	0.167	0.135	*

The relative codon bias between groups of genes was calculated based on the method developed by Karlin et al. [44]. The gene sets listed in columns are used as the reference and the gene sets listed in rows are the focal set. A. Relative codon bias between sets of P. falciparum genes. B. Relative codon bias between sets of T. annulata genes.

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