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Table 2 EST distribution chart for organisms found with CIDE related domains

From: Molecular evolution of Cide family proteins: Novel domain formation in early vertebrates and the subsequent divergence

Organisms Found with Cide Related Domains Species Search Criterior Tissue Distribution#
   CIDE-N 37aa CIDE-C 35aa Cidea Cideb Cidec/Fsp27
Homo sapiens (human) Mammals 281 126 BAT+, WAT, skin, heart, sympathetic trunk liver, small intestine+, kidney, colon, lung, brain, thalamus, cervix, thymus, T-lymphocytes, lymph, placenta, stomach, prostate, testis, eye WAT, white matter, brain, lung, skin, eye, breast, ovary, uterine, pancreas, colon, testis, nasopharynx
Macaca fascicularis   3 1    
Macaca nemestrina   1     
Macaca mulatta   1 1    
Pongo pygmaeus   3     
Papio anubis   2     
Spermophilus lateralis    1    
Mus musculus (mouse)   185 130 BAT+, mammary gland, salivary gland, aorta, thyroids, eye, head, lung, kidney liver, kidney, colon, small intestine+, bowel, placenta WAT+, mammary gland, salivary gland, thyroid, colon, lung, kidney, placenta
Rattus norvegicus   13 15    
Rattus sp.   1 1    
Sus scrofa   89 74    
Bos taurus   98 90    
Ovis aries   13 5    
Capra hircus   1     
Canis lupus familiaris   9 10    
Macropus eugenii   2 2    
Trichosurus vulpecula   11 9    
Gallus gallus (chicken) Birds 40 36 ovary, brain, caecal tonsil, intestinal lymphocyte, liver   liver, small intestine, fat body, intestinal lymphocyte, hearts
Taeniopygia guttata   4 4    
Meleagris gallopavo   1     
Xenopus tropicalis (X.tropicalis) Amphibians 149 146 ovary, brain liver, gut/intestine, fat body, oviduct Small intestine, lung brain
Xenopus laevis   88 77    
Ambystoma mexicanum   1 1    
Danio rerio (zebrafish) Bone Fishes 56 16 eyes liver, gut/intestine liver
Dicentrarchus labrax   1 1    
Cyprinus carpio   1 1    
Fundulus heteroclitus   4 3    
Gasterosteus aculeatus   13 3    
Gadus morhua   4 1    
Misgurnus anguillicaudatus   1     
Ictalurus furcatus   1 1    
Oncorhynchus mykiss   30 30    
Oncorhynchus nerka   1 1    
Oryzias latipes (medaka)   49 44   liver ovary
Pimephales promelas   3     
Platichthys flesus   1 1    
Plecoglossus altivelis altivelis   1 1    
Salmo salar (Atlantic salmon)   12 15 testis gut/intestine, head kidney, thymus, pyloric caecum thyroid, thymus, spleen, pyloric caecum
Sparus aurata   2 2    
Takifugu rubripes (fugu)   2 1    
Thunnus thynnus   2 1    
Zosterisessor ophiocephalus   1 1    
Leucoraja erinacea (little skate) Sharks & Rays 8 2    Liver
Squalus acanthias (spiny dogfish)   3 3    
Branchiostoma floridae (amphioxus) Lancelets 3     
Drosophila melanogaster (fruit fly) Insects 8     
Drosophila pseudoobscura   2     
Drosophila ananassae   1     
Drosophila erecta   1     
Aedes aegypti   3     
Anopheles gambiae   1     
Lutzomyia longipalpis   1     
Phlebotomus papatasi   1     
Bombyx mori   3     
Apis mellifera   1     
Acyrthosiphon pisum   3     
Aphis gossypii   1     
Heliconius erato/himera mixed   1     
Heliconius melpomene   1     
Tribolium castaneum   3     
Diabrotica virgifera virgifera   1     
Rhipicephalus appendiculatus Arachnids 1     
Ixodes scapularis   2     
Daphnia pulex Crustaceans 1     
Homarus americanus   1     
Lottia gigantea Molluscs 4     
Aplysia californica   2     
Crassostrea gigas   2     
Mytilus californianus   2     
Capitella sp. I ECS-2004 Annelids 3     
Nematostella vectensis (sea anemone) Cnidarians 5     
Hydra vulgaris (hydra)   1     
Total EST Hits   1251 857    
  1. # The order of tissues is based on the copy number of cDNAs encoding corresponding protein. The cDNAs from mixed tissues are ignored in counting.
  2. + The high expresion of Cide proteins in these tissues is verified by expriments, but not observed in the current EST database.