TY - JOUR AU - Kreitman, M. AU - Akashi, H. PY - 1995 DA - 1995// TI - Molecular evidence for natural-selection JO - Annu Rev Ecol Syst VL - 26 UR - https://doi.org/10.1146/annurev.es.26.110195.002155 DO - 10.1146/annurev.es.26.110195.002155 ID - Kreitman1995 ER - TY - JOUR AU - Kreitman, M. PY - 2000 DA - 2000// TI - Methods to detect selection in populations with applications to the human JO - Annu Rev Genomics Hum Genet VL - 1 UR - https://doi.org/10.1146/annurev.genom.1.1.539 DO - 10.1146/annurev.genom.1.1.539 ID - Kreitman2000 ER - TY - JOUR AU - Maynard Smith, J. AU - Haigh, J. PY - 1974 DA - 1974// TI - Hitch-hiking effect of a favorable gene JO - Genet Res VL - 23 UR - https://doi.org/10.1017/S0016672300014634 DO - 10.1017/S0016672300014634 ID - Maynard Smith1974 ER - TY - JOUR AU - Fay, J. C. AU - Wu, C. I. PY - 2000 DA - 2000// TI - Hitchhiking under positive Darwinian selection JO - Genetics VL - 155 ID - Fay2000 ER - TY - JOUR AU - Hudson, R. R. AU - Kaplan, N. L. PY - 1988 DA - 1988// TI - The coalescent process in models with selection and recombination JO - Genetics VL - 120 ID - Hudson1988 ER - TY - JOUR AU - Barton, N. H. PY - 1998 DA - 1998// TI - The effect of hitch-hiking on neutral genealogies JO - Genet Res VL - 72 UR - https://doi.org/10.1017/S0016672398003462 DO - 10.1017/S0016672398003462 ID - Barton1998 ER - TY - JOUR AU - Nielsen, R. PY - 2001 DA - 2001// TI - Statistical tests of selective neutrality in the age of genomics JO - Heredity VL - 86 UR - https://doi.org/10.1046/j.1365-2540.2001.00895.x DO - 10.1046/j.1365-2540.2001.00895.x ID - Nielsen2001 ER - TY - JOUR AU - Aguade, M. AU - Miyashita, N. AU - Langley, C. H. PY - 1992 DA - 1992// TI - Polymorphism and divergence in the Mst26a male accessory-gland gene region in Drosophila JO - Genetics VL - 132 ID - Aguade1992 ER - TY - JOUR AU - Depaulis, F. AU - Brazier, L. AU - Veuille, M. PY - 1999 DA - 1999// TI - Selective sweep at the Drosophila melanogaster Suppressor of Hairless locus and its association with the In(2L)t inversion polymorphism JO - Genetics VL - 152 ID - Depaulis1999 ER - TY - JOUR AU - Wang, R. L. AU - Stec, A. AU - Hey, J. AU - Lukens, L. AU - Doebley, J. PY - 1999 DA - 1999// TI - The limits of selection during maize domestication JO - Nature VL - 398 UR - https://doi.org/10.1038/18435 DO - 10.1038/18435 ID - Wang1999 ER - TY - JOUR AU - Quesada, H. AU - Ramirez, U. E. M. AU - Rozas, J. AU - Aguade, M. PY - 2003 DA - 2003// TI - Large-scale adaptive hitchhiking upon high recombination in Drosophila simulans JO - Genetics VL - 165 ID - Quesada2003 ER - TY - JOUR AU - Li, H. P. AU - Stephan, W. PY - 2006 DA - 2006// TI - Inferring the demographic history and rate of adaptive substitution in Drosophila JO - PLoS Genet VL - 2 ID - Li2006 ER - TY - JOUR AU - Felsenstein, J. PY - 1974 DA - 1974// TI - Evolutionary advantage of recombination JO - Genetics VL - 78 ID - Felsenstein1974 ER - TY - JOUR AU - Gillespie, J. H. PY - 2000 DA - 2000// TI - Genetic drift in an infinite population: The pseudohitchhiking model JO - Genetics VL - 155 ID - Gillespie2000 ER - TY - JOUR AU - Hudson, R. R. AU - Kreitman, M. AU - Aguade, M. PY - 1987 DA - 1987// TI - A test of neutral molecular evolution based on nucleotide data JO - Genetics VL - 116 ID - Hudson1987 ER - TY - JOUR AU - Galtier, N. AU - Depaulis, F. AU - Barton, N. H. PY - 2000 DA - 2000// TI - Detecting bottlenecks and selective sweeps from DNA sequence polymorphism JO - Genetics VL - 155 ID - Galtier2000 ER - TY - JOUR AU - Glinka, S. AU - Ometto, L. AU - Mousset, S. AU - Stephan, W. AU - De Lorenzo, D. PY - 2003 DA - 2003// TI - Demography and natural selection have shaped genetic variation in Drosophila melanogaster: A multi-locus approach JO - Genetics VL - 165 ID - Glinka2003 ER - TY - JOUR AU - Nielsen, R. AU - Bustamante, C. AU - Clark, A. G. AU - Glanowski, S. AU - Sackton, T. B. AU - Hubisz, M. J. AU - Fledel-Alon, A. AU - Tanenbaum, D. M. AU - Civello, D. AU - White, T. J. AU - Sninsky, J. AU - Adams, M. D. AU - Cargill, M. PY - 2005 DA - 2005// TI - A scan for positively selected genes in the genomes of humans and chimpanzees JO - PLoS Biol VL - 3 UR - https://doi.org/10.1371/journal.pbio.0030170 DO - 10.1371/journal.pbio.0030170 ID - Nielsen2005 ER - TY - JOUR AU - Charlesworth, B. AU - Charlesworth, D. AU - Barton, N. H. PY - 2003 DA - 2003// TI - The effects of genetic and geographic structure on neutral variation JO - Annu Rev Ecol Syst VL - 34 UR - https://doi.org/10.1146/annurev.ecolsys.34.011802.132359 DO - 10.1146/annurev.ecolsys.34.011802.132359 ID - Charlesworth2003 ER - TY - JOUR AU - Charlesworth, B. AU - Nordborg, M. AU - Charlesworth, D. PY - 1997 DA - 1997// TI - The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations JO - Genet Res VL - 70 UR - https://doi.org/10.1017/S0016672397002954 DO - 10.1017/S0016672397002954 ID - Charlesworth1997 ER - TY - JOUR AU - Slatkin, M. AU - Wiehe, T. PY - 1998 DA - 1998// TI - Genetic hitch-hiking in a subdivided population JO - Genet Res VL - 71 UR - https://doi.org/10.1017/S001667239800319X DO - 10.1017/S001667239800319X ID - Slatkin1998 ER - TY - JOUR AU - Barton, N. H. PY - 2000 DA - 2000// TI - Genetic hitchhiking JO - Philos Trans R Soc Lond B Biol Sci VL - 355 UR - https://doi.org/10.1098/rstb.2000.0716 DO - 10.1098/rstb.2000.0716 ID - Barton2000 ER - TY - JOUR AU - Santiago, E. AU - Caballero, A. PY - 2005 DA - 2005// TI - Variation after a selective sweep in a subdivided population JO - Genetics VL - 169 UR - https://doi.org/10.1534/genetics.104.032813 DO - 10.1534/genetics.104.032813 ID - Santiago2005 ER - TY - JOUR AU - Lewontin, R. C. AU - Krakauer, J. PY - 1973 DA - 1973// TI - Distribution of gene frequency as a test of theory of selective neutrality of polymorphisms JO - Genetics VL - 74 ID - Lewontin1973 ER - TY - JOUR AU - Beaumont, M. A. AU - Nichols, R. A. PY - 1996 DA - 1996// TI - Evaluating loci for use in the genetic analysis of population structure JO - Proc Biol Sci VL - 263 UR - https://doi.org/10.1098/rspb.1996.0237 DO - 10.1098/rspb.1996.0237 ID - Beaumont1996 ER - TY - JOUR AU - Vitalis, R. AU - Dawson, K. AU - Boursot, P. PY - 2001 DA - 2001// TI - Interpretation of variation across marker loci as evidence of selection JO - Genetics VL - 158 ID - Vitalis2001 ER - TY - JOUR AU - Beaumont, M. A. AU - Balding, D. J. PY - 2004 DA - 2004// TI - Identifying adaptive genetic divergence among populations from genome scans JO - Mol Ecol VL - 13 UR - https://doi.org/10.1111/j.1365-294X.2004.02125.x DO - 10.1111/j.1365-294X.2004.02125.x ID - Beaumont2004 ER - TY - JOUR AU - Bierne, N. AU - Daguin, C. AU - Bonhomme, F. AU - David, P. AU - Borsa, P. PY - 2003 DA - 2003// TI - Direct selection on allozymes is not required to explain heterogeneity among marker loci across a Mytilus hybrid zone JO - Mol Ecol VL - 12 UR - https://doi.org/10.1046/j.1365-294X.2003.01936.x DO - 10.1046/j.1365-294X.2003.01936.x ID - Bierne2003 ER - TY - CHAP AU - Wiehe, T. AU - Schmid, K. AU - Stephan, W. ED - Nurminsky, D. ED - Landes, R. ED - Landes, R. PY - 2005 DA - 2005// TI - Selective sweeps in structured populations-Empirical evidence and theoritical studies BT - Selective Sweep PB - New York CY - Kluwer Academic UR - https://doi.org/10.1007/0-387-27651-3_9 DO - 10.1007/0-387-27651-3_9 ID - Wiehe2005 ER - TY - JOUR AU - Pogson, G. H. AU - Mesa, K. A. AU - Boutilier, R. G. PY - 1995 DA - 1995// TI - Genetic population-structure and gene flow in the atlantic cod Gadus morhua - a comparison of allozyme and nuclear RFLP loci JO - Genetics VL - 139 ID - Pogson1995 ER - TY - JOUR AU - Akey, J. M. AU - Eberle, M. A. AU - Rieder, M. J. AU - Carlson, C. S. AU - Shriver, M. D. AU - Nickerson, D. A. AU - Kruglyak, L. PY - 2004 DA - 2004// TI - Population history and natural selection shape patterns of genetic variation in 132 genes JO - PLoS Biol VL - 2 UR - https://doi.org/10.1371/journal.pbio.0020286 DO - 10.1371/journal.pbio.0020286 ID - Akey2004 ER - TY - JOUR AU - Skibinski, D. O. F. AU - Beardmore, J. A. AU - Cross, T. F. PY - 1983 DA - 1983// TI - Aspects of the population-genetics of Mytilus (Mytilidae, Mollusca) in the British-Isles JO - Biol J Linn Soc Lond VL - 19 UR - https://doi.org/10.1111/j.1095-8312.1983.tb00782.x DO - 10.1111/j.1095-8312.1983.tb00782.x ID - Skibinski1983 ER - TY - JOUR AU - Bierne, N. AU - Borsa, P. AU - Daguin, C. AU - Jollivet, D. AU - Viard, F. AU - Bonhomme, F. AU - David, P. PY - 2003 DA - 2003// TI - Introgression patterns in the mosaic hybrid zone between Mytilus edulis and M. galloprovincialis JO - Mol Ecol VL - 12 UR - https://doi.org/10.1046/j.1365-294X.2003.01730.x DO - 10.1046/j.1365-294X.2003.01730.x ID - Bierne2003 ER - TY - JOUR AU - Coustau, C. AU - Renaud, F. AU - Delay, B. PY - 1991 DA - 1991// TI - Genetic-characterization of the hybridization between Mytilus edulis and Mytilus galloprovincialis on the Atlantic coast of France JO - Mar Biol VL - 111 UR - https://doi.org/10.1007/BF01986350 DO - 10.1007/BF01986350 ID - Coustau1991 ER - TY - JOUR AU - Barton, N. H. PY - 2000 DA - 2000// TI - Estimating multilocus linkage disequilibria JO - Heredity VL - 84 UR - https://doi.org/10.1046/j.1365-2540.2000.00683.x DO - 10.1046/j.1365-2540.2000.00683.x ID - Barton2000 ER - TY - JOUR AU - Bierne, N. AU - Tanguy, A. AU - Faure, M. AU - Faure, B. AU - David, E. AU - Boutet, I. AU - Boon, E. AU - Quere, N. AU - Plouviez, S. AU - Kemppainen, P. AU - Jollivet, D. AU - Boudry, P. AU - David, P. PY - 2007 DA - 2007// TI - Mark-recapture cloning: a straightforward and cost-effective cloning method for population genetics of single copy nuclear DNA sequences in diploids JO - Mol Ecol Notes VL - 7 UR - https://doi.org/10.1111/j.1471-8286.2007.01685.x DO - 10.1111/j.1471-8286.2007.01685.x ID - Bierne2007 ER - TY - CHAP AU - Nei, M. PY - 1987 DA - 1987// BT - Molecular evolutionary genetics PB - New York CY - Columbia University Press ID - Nei1987 ER - TY - JOUR AU - Bierne, N. AU - David, P. AU - Boudry, P. AU - Bonhomme, F. PY - 2002 DA - 2002// TI - Assortative fertilization and selection at larval stage in the mussels Mytilus edulis and M. gallopovincialis JO - Evolution VL - 56 UR - https://doi.org/10.1111/j.0014-3820.2002.tb01339.x DO - 10.1111/j.0014-3820.2002.tb01339.x ID - Bierne2002 ER - TY - JOUR AU - Tajima, F. PY - 1989 DA - 1989// TI - Statistical method for testing the neutral mutation hypothesis by DNA polymorphism JO - Genetics VL - 123 ID - Tajima1989 ER - TY - JOUR AU - Pennings, P. S. AU - Hermisson, J. PY - 2006 DA - 2006// TI - Soft sweeps III: The signature of positive selection from recurrent mutation JO - PLoS Genet VL - 2 UR - https://doi.org/10.1371/journal.pgen.0020186 DO - 10.1371/journal.pgen.0020186 ID - Pennings2006 ER - TY - JOUR AU - Pialek, J. AU - Barton, N. H. PY - 1997 DA - 1997// TI - The spread of an advantageous allele across a barrier: the effects of random drift and selection against heterozygotes JO - Genetics VL - 145 ID - Pialek1997 ER - TY - JOUR AU - Luikart, G. AU - England, P. R. AU - Tallmon, D. AU - Jordan, S. AU - Taberlet, P. PY - 2003 DA - 2003// TI - The power and promise of population genomics: From genotyping to genome typing JO - Nat Rev Genet VL - 4 UR - https://doi.org/10.1038/nrg1226 DO - 10.1038/nrg1226 ID - Luikart2003 ER - TY - JOUR AU - Pollinger, J. P. AU - Bustamante, C. D. AU - Fledel-Alon, A. AU - Schmutz, S. AU - Gray, M. M. AU - Wayne, R. K. PY - 2005 DA - 2005// TI - Selective sweep mapping of genes with large phenotypic effects JO - Genome Res VL - 15 UR - https://doi.org/10.1101/gr.4374505 DO - 10.1101/gr.4374505 ID - Pollinger2005 ER - TY - JOUR AU - Bonin, A. AU - Taberlet, P. AU - Miaud, C. AU - Pompanon, F. PY - 2006 DA - 2006// TI - Explorative genome scan to detect candidate loci for adaptation along a gradient of altitude in the common frog (Rana temporaria) JO - Mol Biol Evol VL - 23 UR - https://doi.org/10.1093/molbev/msj087 DO - 10.1093/molbev/msj087 ID - Bonin2006 ER - TY - JOUR AU - Murray, M. C. AU - Hare, M. P. PY - 2006 DA - 2006// TI - A genomic scan for divergent selection in a secondary contact zone between Atlantic and Gulf of Mexico oysters, Crassostrea virginica JO - Mol Ecol VL - 15 UR - https://doi.org/10.1111/j.1365-294X.2006.03060.x DO - 10.1111/j.1365-294X.2006.03060.x ID - Murray2006 ER - TY - JOUR AU - Turner, T. L. AU - Hahn, M. W. AU - Nuzhdin, S. V. PY - 2005 DA - 2005// TI - Genomic islands of speciation in Anopheles gambiae JO - PLoS Biol VL - 3 UR - https://doi.org/10.1371/journal.pbio.0030285 DO - 10.1371/journal.pbio.0030285 ID - Turner2005 ER - TY - JOUR AU - Kaplan, N. L. AU - Hudson, R. R. AU - Langley, C. H. PY - 1989 DA - 1989// TI - The "hitchhiking effect" revisited JO - Genetics VL - 123 ID - Kaplan1989 ER - TY - JOUR AU - Wiehe, T. H. AU - Stephan, W. PY - 1993 DA - 1993// TI - Analysis of a genetic hitchhiking model, and its application to DNA polymorphism data from Drosophila melanogaster JO - Mol Biol Evol VL - 10 ID - Wiehe1993 ER - TY - JOUR AU - Kim, Y. AU - Stephan, W. PY - 2002 DA - 2002// TI - Detecting a local signature of genetic hitchhiking along a recombining chromosome JO - Genetics VL - 160 ID - Kim2002 ER - TY - JOUR AU - Lallias, D. AU - Lapegue, S. AU - Hecquet, C. AU - Boudry, P. AU - Beaumont, A. R. PY - 2007 DA - 2007// TI - AFLP-based genetic linkage maps of the blue mussel (Mytilus edulis) JO - Anim Genet VL - 38 UR - https://doi.org/10.1111/j.1365-2052.2007.01611.x DO - 10.1111/j.1365-2052.2007.01611.x ID - Lallias2007 ER - TY - JOUR AU - Saavedra, C. AU - Bachere, E. PY - 2006 DA - 2006// TI - Bivalve genomics JO - Aquaculture VL - 256 UR - https://doi.org/10.1016/j.aquaculture.2006.02.023 DO - 10.1016/j.aquaculture.2006.02.023 ID - Saavedra2006 ER - TY - JOUR AU - Schlotterer, C. PY - 2002 DA - 2002// TI - Towards a molecular characterization of adaptation in local populations JO - Curr Opin Genet Dev VL - 12 UR - https://doi.org/10.1016/S0959-437X(02)00349-0 DO - 10.1016/S0959-437X(02)00349-0 ID - Schlotterer2002 ER - TY - CHAP AU - Hedgecock, D. ED - Beaumont, A. R. PY - 1994 DA - 1994// TI - Does variance in reproductive success limit effective population sizes of marine organisms? BT - Genetics and Evolution of Aquatic Organisms PB - London CY - Hall ID - Hedgecock1994 ER - TY - JOUR AU - Ward, R. D. AU - Skibinski, D. O. F. AU - Woodwark, M. PY - 1992 DA - 1992// TI - Protein heterozygosity, protein-structure, and taxonomic differentiation JO - Evol Biol VL - 26 ID - Ward1992 ER - TY - JOUR AU - Bazin, E. AU - Glemin, S. AU - Galtier, N. PY - 2006 DA - 2006// TI - Population size does not influence mitochondrial genetic diversity in animals JO - Science VL - 312 UR - https://doi.org/10.1126/science.1122033 DO - 10.1126/science.1122033 ID - Bazin2006 ER - TY - JOUR AU - Sauvage, C. AU - Bierne, N. AU - Lapegue, S. AU - Boudry, P. PY - 2007 DA - 2007// TI - Single nucleotide polymorphisms and their relationship to codon usage bias in the Pacific oyster Crassostrea gigas JO - Gene VL - 406 UR - https://doi.org/10.1016/j.gene.2007.05.011 DO - 10.1016/j.gene.2007.05.011 ID - Sauvage2007 ER - TY - JOUR AU - Eyre-Walker, A. PY - 2006 DA - 2006// TI - Evolution - Size does not matter for mitochondrial DNA JO - Science VL - 312 UR - https://doi.org/10.1126/science.1127182 DO - 10.1126/science.1127182 ID - Eyre-Walker2006 ER - TY - JOUR AU - Barton, N. H. PY - 1979 DA - 1979// TI - The dynamics of hybrid zone. JO - Heredity VL - 43 UR - https://doi.org/10.1038/hdy.1979.87 DO - 10.1038/hdy.1979.87 ID - Barton1979 ER - TY - JOUR AU - Daguin, C. AU - Bonhomme, F. AU - Borsa, P. PY - 2001 DA - 2001// TI - The zone of sympatry and hybridization of Mytilus edulis and M. galloprovincialis, as described by intron length polymorphism at locus mac-1 JO - Heredity VL - 86 UR - https://doi.org/10.1046/j.1365-2540.2001.00832.x DO - 10.1046/j.1365-2540.2001.00832.x ID - Daguin2001 ER - TY - JOUR AU - Bierne, N. AU - David, P. AU - Langlade, A. AU - Bonhomme, F. PY - 2002 DA - 2002// TI - Can habitat specialisation maintain a mosaic hybrid zone in marine bivalves? JO - Mar Ecol Prog Ser VL - 245 UR - https://doi.org/10.3354/meps245157 DO - 10.3354/meps245157 ID - Bierne2002 ER - TY - JOUR AU - Nei, M. PY - 1978 DA - 1978// TI - Estimation of average heterozygosity and genetic distance from a small number of individuals JO - Genetics VL - 89 ID - Nei1978 ER - TY - CHAP AU - Belkhir, K. AU - Borsa, P. AU - Goudet, J. AU - Chikhi, L. AU - Bonhomme, F. PY - 1999 DA - 1999// BT - Genetix PB - Montpellier CY - Université de Montpellier 2 ID - Belkhir1999 ER - TY - JOUR AU - Raymond, M. AU - Rousset, F. PY - 1995 DA - 1995// TI - Genepop (version-1.2) - Population-genetics software for exact tests and ecumenicism JO - J Hered VL - 86 ID - Raymond1995 ER - TY - JOUR AU - Thompson, J. D. AU - Higgins, D. G. AU - Gibson, T. J. PY - 1994 DA - 1994// TI - Clustal-W - Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice JO - Nucleic Acids Res VL - 22 UR - https://doi.org/10.1093/nar/22.22.4673 DO - 10.1093/nar/22.22.4673 ID - Thompson1994 ER - TY - JOUR AU - Hall, T. A. PY - 1999 DA - 1999// TI - BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. JO - Nucleic Acids Symp Ser VL - 42 UR - https://doi.org/10.1093/nass/42.1.95 DO - 10.1093/nass/42.1.95 ID - Hall1999 ER - TY - JOUR AU - Kumar, S. AU - Tamura, K. AU - Nei, M. PY - 2004 DA - 2004// TI - MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment JO - Brief Bioinform VL - 5 UR - https://doi.org/10.1093/bib/5.2.150 DO - 10.1093/bib/5.2.150 ID - Kumar2004 ER - TY - JOUR AU - Rozas, J. AU - Sanchez-DelBarrio, J. C. AU - Messeguer, X. AU - Rozas, R. PY - 2003 DA - 2003// TI - DnaSP, DNA polymorphism analyses by the coalescent and other methods JO - Bioinformatics VL - 19 UR - https://doi.org/10.1093/bioinformatics/btg359 DO - 10.1093/bioinformatics/btg359 ID - Rozas2003 ER - TY - JOUR AU - Watterson, G. A. PY - 1975 DA - 1975// TI - On the number of segregating sites in genetical models without recombination JO - Theor Popul Biol VL - 7 UR - https://doi.org/10.1016/0040-5809(75)90020-9 DO - 10.1016/0040-5809(75)90020-9 ID - Watterson1975 ER - TY - JOUR AU - Hudson, R. R. AU - Kaplan, N. L. PY - 1985 DA - 1985// TI - Statistical properties of the number of recombination events in the history of a sample of DNA-sequences JO - Genetics VL - 111 ID - Hudson1985 ER - TY - JOUR AU - Depaulis, F. AU - Mousset, S. AU - Veuille, M. PY - 2001 DA - 2001// TI - Haplotype tests using coalescent simulations conditional on the number of segregating sites JO - Mol Biol Evol VL - 18 UR - https://doi.org/10.1093/oxfordjournals.molbev.a003885 DO - 10.1093/oxfordjournals.molbev.a003885 ID - Depaulis2001 ER -