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Table 1 Microsatellite loci and PCR conditions used in the present study, and population-wise number of alleles obtained for Indian chicken. Original references are listed in the table.

From: Genetic evidence from Indian red jungle fowl corroborates multiple domestication of modern day chicken

Locus

Repeat motif

Allele Size range

Tm °C

MgCl2

Total no. of alleles*

Reference

     

G. sonneratii

G. g. murghi

G. g. domesticus

 

ADL210

(AC)15

116–130

46

1.5 mM

1

2

5

[41]

CALB1

(T)25

76–106

55

2.5 mM

2

3

3

[42]

HSF3A

(GAG)10

230–259

55

1 mM

2

12

8

[42]

HUJ1

(GT)23

150–180

55

1.5 mM

4

11

7

[43]

MCW1

(GT)9

157–171

62

1.5 mM

1

6

5

[42]

MCW305

(GT)13

250–275

55

1.5 mM

3

3

7

[43]

MCW306

(AT)11

142–176

55

1.5 mM

4

9

6

[43]

MCW4

(TG)8

146–188

67

2.5 mM

2

15

3

[18]

MCW5

(TG)6AA(TG)6(A)15 (GA)2(GAA)21

184–263

62

1.5 mM

4

18

9

[18]

MYCN

(TG)17

174–210

69

2 mM

4

12

5

[43]

VITIIG2

(TTTG)6

143–179

51

3 mM

5

15

1

[41]

Total

    

32

106

59

 
  1. *No. of alleles obtained in the present study.