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Table 4 Model selected and parameters values with their 95% credibility intervals when applicable (obtained with MRBAYES).

From: Tracing the colonization history of the Indian Ocean scops-owls (Strigiformes: Otus) with further insight into the spatio-temporal origin of the Malagasy avifauna

 

Myoglobin

TGFB2

ND2

ATP6

ND3

Cytochrome-b

Model

K80 + Γ

HKY + Γ

GTR + Γ + I

GTR + Γ + I

GTR + Γ + I

GTR + Γ + I

1st position

NA

NA

GTR + Γ + I

GTR + Γ + I

SYM + Γ

GTR + Γ + I

2nd position

NA

NA

GTR + Γ + I

GTR + Γ + I

GTR + Γ

GTR + Γ + I

3rd position

NA

NA

GTR + Γ + I

GTR + Γ + I

HKY + Γ + I

GTR + Γ

Freq A

0.25

0.25 (0.22–0.28)

0.37 (0.34–0.39)

0.33 (0.30–0.36)

0.32 (0.28–0.36)

0.32 (0.30–0.35)

Freq C

0.25

0.21 (0.18–0.24)

0.41 (0.39–0.43)

0.44 (0.41–0.46)

0.41 (0.37–0.45)

0.44 (0.42–0.47)

Freq G

0.25

0.24 (0.21–0.27)

0.06 (0.05–0.07)

0.07 (0.06–0.08)

0.09 (0.07–0.11)

0.08 (0.07–0.09)

Freq T

0.25

0.30 (0.27–0.33)

0.16 (0.15–0.18)

0.16 (0.14–0.18)

0.18 (0.16–0.21)

0.16 (0.14–0.17)

A-C

NA

NA

0.016 (0.012–0.020)

0.020 (0.013–0.027)

0.022 (0.013–0.032)

0.014 (0.009–0.020)

A-G

NA

NA

0.663 (0.607–0.718)

0.564 (0.484–0.642)

0.535 (0.429–0.637)

0.549 (0.474–0.621)

A-T

NA

NA

0.021 (0.014–0.029)

0.035 (0.022–0.050)

0.015 (0.005–0.029)

0.032 (0.019–0.047)

C-G

NA

NA

0.005 (0.0002–0.014)

0.024 (0.012–0.039)

0.007 (0.0002–0.218)

0.010 (0.0002–0.020)

C-T

NA

NA

0.232 (0.188–0.281)

0.323 (0.252–0.399)

0.327 (0.240–0.425)

0.321 (0.259–0.390)

G-T

NA

NA

0.062 (0.035–0.094)

0.035 (0.010–0.069)

0.094 (0.051–0.146)

0.074 (0.041–0.114)

Γ

0.10 (0.09–.12)

0.586 (0.382–0.936)

0.997 (0.826–1.195)

0.901 (0.676–1.158)

0.910 (0.604–1.295)

0.869 (0.702–1.069)

I

NA

NA

0.338 (0.302–0.374)

0.400 (0.345–0.447)

0.368 (0.287–0.433)

0.465 (0.426–0.501)

Ts/Tv

4.24 (3.08–5.75)

5.90 (4.32–7.795)

NA

NA

NA

NA

-ln (ML)

2198.81

2131.71

10556.45

6550.30

3266.29

8623.79

-ln (BI)

2442.98

2179.36

10582.97

6585.41

3305.87

8658.36

-ln (BI partitioned)

NA

NA

10161.23

6232.87

3146.47

8128.06

  1. NA means not applicable. Reported likelihood scores for the BI refer to the arithmetic mean.