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Table 1 Best model and estimated substitution parameter values.

From: Phylogeny and biogeography of African Murinae based on mitochondrial and nuclear gene sequences, with a new tribal classification of the subfamily

Gene Cytochrome b IRBP GHR Combined data
Length (bp) 1140 1233 931 3304
Best model GTR+G+I TVM+G+I TVM+G+I GTR+G+I
πA 0.424 0.231 0.308 0.318
πC 0.324 0.278 0.252 0.287
πG 0.029 0.267 0.198 0.180
πT 0.223 0.224 0.242 0.215
rA-C 0.036 1.321 1.011 1.867
rA-G 3.821 6.415 5.880 4.316
rA-T 0.210 0.931 0.836 3.101
rC-G 0.251 0.621 1.376 0.632
rC-T 5.453 6.415 5.880 29.243
rG-T 1.000 1.000 1.000 1.000
α 0.475 0.918 0.640 0.290
Pinv 0.410 0.281 0.059 0.215
  1. These values were estimated from maximum-likelihood analysis of each gene separately (cytochrome b, IRBP, and GHR, respectively) and of the combined data set.