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Table 1 Number of significant windows where expression is co-evolving.

From: Coordinated evolution of co-expressed gene clusters in the Drosophila transcriptome

Chr

Pval

2

4

6

8

10

12

14

16

18

20

X

0.05

31(28.95)

82(75.8)

95(96.75)

114(105.35)

116(109.45)

123(111.2)

117(112.3)

121(112.9)

113(113.25)

126(113.5)

X

0.01

13(5.79)

22(15.16)

25(19.35)

22(21.07)

30(21.89)

28(22.24)

30(22.46)

33(22.58)

30(22.65)

33(22.7)

X

0.001

5(0.579)

7(1.516)

9(1.935)

9(2.107)

9(2.189)

9(2.224)

12(2.246)

10(2.258)

7(2.265)

5(2.27)

2L

0.05

37(31.8)

79(82)

110(106.1)

121(118.3)

135(123.95)

132(126.15)

143(127.3)

139(128.35)

144(129.05)

137(129.35)

2L

0.01

9(6.36)

19(16.4)

26(21.22)

27(23.66)

29(24.79)

33(25.23)

40(25.46)

26(25.67)

35(25.81)

39(25.87)

2L

0.001

2(0.636)

9(1.64)

5(2.122)

5(2.366)

4(2.479)

7(2.523)

15(2.546)

10(2.567)

10(2.581)

8(2.587)

2R

0.05

47(37.9)

113(94.9)

151(121.55)

163(133.4)

150(138.7)

139(140.95)

126(142.15)

143(143.05)

143(143.6)

170(144.15)

2R

0.01

11(7.58)

24(18.98)

39(24.31)

45(26.68)

48(27.74)

48(28.19)

57(28.43)

63(28.61)

65(28.72)

68(28.83)

2R

0.001

3(0.758)

10(1.898)

16(2.431)

26(2.668)

24(2.774)

31(2.819)

30(2.843)

41(2.861)

34(2.872)

41(2.883)

3L

0.05

46(38.25)

105(94.8)

133(118)

129(128.4)

145(132.95)

141(135.1)

147(136.3)

147(137.1)

135(137.65)

133(138)

3L

0.01

16(7.65)

28(18.96)

38(23.6)

33(25.68)

34(26.59)

39(27.02)

39(27.26)

33(27.42)

25(27.53)

19(27.6)

3L

0.001

9(0.765)

10(1.896)

10(2.36)

10(2.568)

13(2.659)

14(2.702)

5(2.726)

12(2.742)

5(2.753)

1(2.76)

3R

0.05

68(50.45)

129(120.65)

148(152.05)

170(165.25)

193(170.9)

198(173.7)

175(175.25)

160(175.8)

161(176)

181(176.05)

3R

0.01

15(10.09)

34(24.13)

33(30.41)

39(33.05)

44(34.18)

38(34.74)

37(35.05)

31(35.16)

32(35.2)

27(35.21)

3R

0.001

6(1.009)

8(2.413)

12(3.041)

16(3.305)

15(3.418)

11(3.474)

13(3.505)

16(3.516)

6(3.52)

10(3.521)

4

0.05

1(0.55)

2(2)

4(2.95)

8(3.6)

8(3.85)

9(3.95)

9(3.9)

5(3.8)

3(3.7)

2(3.6)

4

0.01

0(0.11)

2(0.4)

3(0.59)

5(0.72)

6(0.77)

5(0.79)

3(0.78)

5(0.76)

0(0.74)

0(0.72)

4

0.001

0(0.011)

1(0.04)

3(0.059)

5(0.072)

6(0.077)

5(0.079)

0(0.078)

0(0.076)

0(0.074)

0(0.072)

TOTAL

0.05

230(187.9)

510(470.15)

641(597.4)

705(654.3)

747(679.8)

742(691.05)

717(697.2)

715(701)

699(703.25)

749(704.65)

TOTAL

0.01

64(37.58)

129(94.03)

164(119.48)

171(130.86)

191(135.96)

191(138.21)

206(139.44)

191(140.2)

187(140.65)

186(140.93)

TOTAL

0.001

25(3.758)

45(9.403)

55(11.948)

71(13.086)

71(13.596)

77(13.821)

75(13.944)

89(14.02)

62(14.065)

65(14.093)

  1. The total number of significant tests obtained from the sliding window analysis for even numbered window sizes are presented with the expected numbers assuming a null distribution in parentheses.