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Table 1 Human TRIM genes included in our studya

From: Genomic analysis of the TRIM family reveals two groups of genes with distinct evolutionary properties

 

DOMAINSb

ACC. No.

MAPPING

Alternative names

TRIM1

R-B1-B2-CC-COS-FN3-SPRY

NM_052817

Xq22.3

MID2

TRIM2

R-B2-CC-IGFLMN-NHL(6)

NM_015271

4q31.3

RNF86, KIAA0517, Narf

TRIM3

R-B2-CC-IGFLMN-NHL(6)

NM_006458

11p15.4

BERP, HAC1, RNF22, RNF97

TRIM4

R-B2-CC-PRY-Spry

NM_033091

7q22.1

RNF87

TRIM5

R-B2-CC-PRY-Spry

NM_033034

11p15.4

RNF88

TRIM6

R-B2-CC-PRY-SPRY

NM_001003818

11p15.4

RNF89

TRIM7

R-B2-CC-PRY-SPRY

NM_203293

5q35.3

GNIP, RNF90

TRIM8

R-B1-B2-CC-nd

NM_030912

10q24.32

GERP, RNF27

TRIM9

R-B1-B2-CC-COS-FN3-SPRY

NM_015163

14q22.1

RNF91, SPRING, KIAA0282

TRIM10

R-B2-CC-PRY-SPRY

NM_006778

6p21.33

RNF9, HERF1, RFB30

TRIM11

R-B2-CC-PRY-SPRY

NM_145214

1q42.13

BIA1, RNF92

TRIM13

R-B2-CC-TM

NM_005798

13q14.2

CAR, LEU5, RNF77, RFP2

TRIM15

R-B2-CC-PRY-SPRY

NM_033229

6p21.33

RNF93, ZNFB7

TRIM17

R-B2-CC-PRY-SPRY

NM_016102

1q42.13

RBCC, terf, RNF16

TRIM18

R-B1-B2-CC-COS-FN3-PRY-SPRY

NM_000381

Xp22.22

MID1, FXY, OSX, XPRF, GBBB1, RNF59, ZNFXY,

TRIM19

R-B1-B2-CC-EXOIII

NM_033238

15q24.1

PML, MYL, RNF71

TRIM21

R-B2-CC-PRY-SPRY

NM_003141

11p15.4

RO/SSA, SSA, RO52, RNF81

TRIM22

R-B2-CC-Spry

NM_006074

11p15.4

STAF50, RNF94

TRIM23

R-B1-B2-CC-ARF

NM_001656

5q12.3

ARD1, RNF46

TRIM24

R-B1-B2-CC-PHD-BROMO

NM_015905

7q33-q34

PTC6, TF1A, RNF82, TIF1A, hTIF1, TIF1ALPHA

TRIM25

R-B1-B2-CC-PRY-SPRY

NM_005082

17q23.2

EFP, Z147, RNF147

TRIM26

R-B2-CC-PRY-SPRY

NM_003449

6p21.33

AFP, RNF95, ZNF173

TRIM27

R-B2-CC-PRY-SPRY

NM_006510

6p22.1

RFP, RNF76

TRIM28

R-B1-B2-CC-PHD-BROMO

NM_005762

19q13.43

KAP1, TF1B, RNF96, TIF1B

TRIM31

R-B2-CC-nd

NM_007028

6p22.1

RING, RNF, HCG1, HCGI, C6orf13

TRIM32

R-B2-CC-NHL(5)

NM_012210

9q33.1

HT2A, TATIP, LGMD2H

TRIM33

R-B1-B2-CC-PHD-BROMO

NM_015906

1p13.2

TIF1g, PTC7, RFG7, TIF1G, FLJ11429, KIAA1113

TRIM34

R-B2-CC-SPRY

NM_021616

11p15.4

IFP1, RNF21

TRIM35

R-B2-CC-PRY-Spry

NM_015066

8p21.2

HLS5, MAIR, KIAA1098, MGC17233

TRIM36

R-B1-B2-CC-COS-FN3-Spry

NM_018700

5q22.3

RNF98, RBCC728, haprin

TRIM37

R-B2-CC-MATH

NM_015294

17q23.2

MUL, TEF3, KIAA0898

TRIM38

R-B2-CC-PRY-SPRY

NM_006355

6p22.2

RNF15

TRIM39

R-B2-CC-PRY-SPRY

NM_021253

6p21.33

RNF23

TRIM40

R-B2-CC

NM_138700

6p21.33

RNF35

TRIM41

R-B2-CC-PRY-Spry

NM_033549

5q35.3

MGC1127, MGC31991

TRIM42

R-B1-B2-CC-COS-FN3

NM_152616

3q23

FLJ40097

TRIM43

R-B2-CC-Spry

NM_138800

2q11.1

 

TRIM45

R-B1-B2-CC-IGFLMN

NM_025188

1p13.1

RNF99, FLJ13181

TRIM46

R-B1-B2-CC-COS-FN3-Spry

NM_025058

1q22

FLJ23229, TRIFIC

TRIM47

R-B1-B2-CC-PRY-Spry

NM_033452

17q25.1

GOA, RNF100

TRIM49

R-B2-CC-Spry

NM_020358

11q14.3

RNF18

TRIM50

R-B2-CC-PRY-Spry

NM_178125

7q11.23

 

TRIM54

R-B2-CC-COS

NM_032546

2p23.3

RNF30, MURF1

TRIM55

R-B2-CC-COS

NM_184085

8q13.1

RNF29

TRIM56

R-B1-B2-CC-nd

NM_030961

7q22.1

RNF109, DKFZP667O116

TRIM58

R-B2-CC-PRY-SPRY

NM_015431

1q44

BIA2, FLJ38869, DKFZp434c091

TRIM59

R-B2-CC-TM

NM_173084

3q25.33

RNF104, TSBF1

TRIM60

R-B2-CC-PRY-Spry

NM_152620

4q32.3

RNF129, FLJ35882

TRIM61

R-B2-CC-PRY-Spry

NM_001012414

4q32.3

 

TRIM62

R-B2-CC-PRY-Spry

NM_018207

1p35.1

FLJ16558

TRIM63

R-B2-CC-COS

NM_032588

1p36.11

RNF28, MURF2, IRIS

TRIM64

R-B2-CC-Spry

XM_061890

11q14.3

 

TRIM65

R-B2-CC-Spry

NM_173547

17q25.1

 

TRIM67

R-B1-B2-CC-COS-FN3-Spry

NM_001004342

1q42.2

TNL

TRIM68

R-B2-CC-PRY-SPRY

NM_018073

11p15.4

SS-56, DKFZp686D0513, RNF137, FLJ10369

TRIM71

R-B1-B2-CC-IGFLMN-NHL(6)

DQ232881

3p23

hLIN41

TRIM72

R-B2-CC-PRY-Spry

NM_001008274

16p11.2

 

TRIM73

R-B2-CC

XM_353628

7q11.23

TRIM50B

TRIM74

R-B2-CC

NM_198853

7q11.23

TRIM50C

TRIM75

R-B2-CC-PRY-SPRY

XM_939332

4q32.3

 

KIAA0129

B2-CC-PRY-SPRY

NM_033220

9q22.33

TRIM14, Pub

EBBP

B1-B2-CC-PRY-SPRY

NM_006470

17p12

TRIM16

PYRIN

PAAD-B2-CC-PRY-SPRY

NM_000243

16p13.3

TRIM20, MARENOSTRIN, FMF, MEFV

ATDC

B1-B2-CC-nd

NM_012101

11q23.3

TRIM29

DIPB

B1-B2-CC

NM_017583

11p13

TRIM44

KIAA0298

B1-B2-CC-PHD-BROMO

XM_084529

11p15.4

TRIM66

RNF101

R-B2

NM_024114

11q11

TRIM48, MGC4827

RNF102

R-B2

NM_032765

5q35.3

TRIM52, MGC16175

  1. a The 68 genes listed include 60 TRIM genes and the 8 genes with an incomplete tripartite motif (see text).
  2. b R, RING finger; B1, B-box1 domain; B2, B-box2 domain; CC, Coiled-coil; FNIII, Fibronectin type III repeat; PRY, PRY domain; SPRY domain; Spry, SPRY domain detected only by PFAM; NHL, NHL repeats; IGFLMN, Filamin type immunoglobulin domain; MATH, MATH domain; PHD, Plant Homeodomain; BROMO, BROMO domain; ARF, ARF domain; PAAD, PAAD domain; COS, COS-box; ExoIII, Exonuclease III motif; nd, no known domain detected.