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Figure 1 | BMC Evolutionary Biology

Figure 1

From: Sox genes in the coral Acropora millepora: divergent expression patterns reflect differences in developmental mechanisms within the Anthozoa

Figure 1

Maximum Likelihood phylogenetic analyses of Acropora Sox genes in MolPhy version 2.3[49] using the Dayhoff model of protein evolution and local rearrangement of the NJ trees (1,000 bootstraps). Acropora millepora Sox genes are shown in red, while Nematostella vectensis genes are shown in blue. The inset, showing the B1 and B2 families, has been stretched horizontally to clarify the relationship between the B1 and B2 genes for the reader. Species names are abbreviated as follows; Am, coral, Acropora millepora; Amq, demosponge, Amphimedon queenslandica; Bb, Japanese lancelet, Branchiostoma belcheri; Ce, nematode, Caenorhabditis elegans; Ci, ascidian, Ciona intestinalis; Dm, fruit-fly, Drosophila melanogaster; Dr, zebrafish, Danio rerio. Fr, Japanese pufferfish, Fugu rubripes; Gg, chicken, Gallus gallus; Hs, human, Homo sapiens; Hv, hydra, Hydra vulgaris; Mm, mouse, Mus musculus; Nc, red bread mold, Neurospora crassa; Nv, sea anemone, Nematostella vectensis; Om, rainbow trout, Oncorhynchus mykiss; Pm, sea lamprey, Petromyzon marinus; Sk, hemichordate, Saccoglossus Kowalevskii; Sp, sea urchin, Strongylocentrotus purpuratus; Tc, red flour beetle, Tribolium castaneum; Xl, frog, Xenopus laevis; ye-, yeast, Schizosaccharomyces pombe.

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