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Table 3 Analysis of a large phylogenomic data set [29] consisting of 133 proteins from 40 taxa, 24294 sites for two competing trees under single frequency model and cF mixture model.

From: A class frequency mixture model that adjusts for site-specific amino acid frequencies and improves inference of protein phylogeny

Tree

Single frequency model (JTT + F + Γ)

Class-frequency mixture model (JTT + cF + Γ)

Microsporidia plus archaea clan

-745,292.15*

-738,445.15

Microsporidia plus Fungi clade

-745,366.62

-738,371.59*

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BMC Ecology and Evolution

ISSN: 2730-7182

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