Figure 4
Phylogenetic tree based on complete J1b sequences. Numbers along links refer to nucleotide positions. T indicates transversion and "i" insertions. Recurrent mutations are underlined. Regions not analyzed are in parenthesis. Star differs from rCRS [62, 63] at positions: 73, 263, 295, 311i, 489, 750, 1438, 2706, 4216, 4769, 7028, 8860, 10398, 11251, 11719, 12612, 13708, 14766, 15326, 15452A, 16069 and 16126. GenBank accession numbers of the subjects retrieved from the literature are: R80 Pal (AY714033) and B30 Pal (AY714035) from Palanichamy et al. [18]; 498 Her (EF657673) and 501 Her (EF657678) from Herrnstad et al. [64]; 238 Cob (AY495238), 231 Cob (AY495231), 234 Cob (AY495234), 235 Cob (AY495235), 232 Cob (AY495232), 236 Cob (AY495236), 237 Cob (AY495237) and 233 Cob (AY495233) from Coble et al. [65]; L21 and L170 from Rose et al. [66]; 181 Fin (AY339582) and 180 Fin (AY339581) from Finnilä et al. [50]; 7 Est from Esteitie et al. [67]; 87 MM (AF381987) from Maca-Meyer et al. [6]; 488 (DQ282488), 489 (DQ282489), 490 (DQ282490), 492 (DQ282492) and 491 Jus (DQ282491) from Just et al. [68].