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Table 1 Statistical tests and parameter estimates for mutation and recombination

From: Recombination, cryptic clades and neutral molecular divergence of the microcystin synthetase (mcy) genes of toxic cyanobacterium Microcystis aeruginosa

  

S 1

π 2

D 3

ρ 4

θ 5

ρ/θ

R M 6

P LPT 7

P Φ 8

mcyD

All ( n = 118)

43

0.01529

0.133

12.6

8.047

1.56

10

0.075

0.6829

 

Group A 9 ( n = 89)

37

0.01427

0.230

14.62

7.114

2.05

10

0.037*

0.875

 

Group B 9 ( n = 29)

6

0.00171

-1.105

4.97

1.528

3.25

0

0.020*

1.00

mcyG

All ( n = 118)

39

0.0193

1.402

1.7

6.176

0.275

5

0.298

0.5092

 

Group A 9 ( n = 87)

14

0.00559

0.289

10.95

2.382

4.59

2

0.018*

0.012*

 

Group B 9 ( n = 31)

19

0.00635

-0.921

0

4.506

0

0

0.08

1.00

mcyJ

All ( n = 118)

27

0.0128

1.174

19.5

5.053

3.85

7

0.012*

0.0012**

 

Group A 9 ( n = 84)

16

0.00895

1.559

17.6

3.199

5.5

5

0.034*

0.026*

 

Group B 9 ( n = 34)

18

0.00712

-0.359

18.4

4.402

4.17

4

0.362

0.428

  1. * P < 0.05, ** P < 0.01
  2. 1 Number of segregating sites.
  3. 2 Nucleotide diversity [21].
  4. 3 Tajima's D [22].
  5. 4 Population recombination rate (= 2Ner) estimated from the sites with two alleles.
  6. 5 Population mutation rate (= 2Neμ) estimated from the sites with two alleles.
  7. 6 Minimum number of recombination based on Hudson and Kaplan [24].
  8. 7P-value of likelihood permutation test [25].
  9. 8P-value of Φ test [29].
  10. 9STs that show discordant group assignment between loci (ST10, 11, 24, and 46) are also included.