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Table 3 Total number of network-related loci and 3R-WGD-derived duplicated loci identified in each teleost genome.

From: Temporal pattern of loss/persistence of duplicate genes involved in signal transduction and metabolic pathways after teleost-specific genome duplication

 

LTP

TT

OT

 

# of loci

3R-derived

# of loci

3R-derived

# of loci

3R-derived

CA

58

NA

22

NA

22

NA

Tetraodon

66 (68)

26 (26)

24 (27)

6 (6)

29 (31)

16 (18)

Stickleback

71 (74)

34 (35)

27 (34)

12 (12)

27 (33)

16 (22)

Medaka

71 (73)

30 (31)

25 (27)

10 (10)

26 (26)

12 (12)

Zebrafish

55 (61)

22 (23)

24 (25)

10 (10)

26 (29)

12 (13)

Average

65.8 (69.0)

28.0 (28.8)

25.0 (28.3)

9.5 (9.5)

27.0 (29.8)

14.0 (16.3)

 

TCA

Grand total1

  
 

# of loci

3R-derived

# of loci

3R-derived

  

CA

27

NA

116

NA

  

Tetraodon

30 (31)

10 (10)

133 (141)

52 (54)

  

Stickleback

33 (33)

16 (16)

144 (162)

72 (79)

  

Medaka

31 (31)

10 (10)

136 (140)

56 (57)

  

Zebrafish

26 (31)

2 (2)

117 (131)

38 (40)

  

Average

30.0 (31.5)

9.5 (9.5)

132.5 (143.5)

54.5 (57.5)

  
  1. The numerals in parentheses indicate the number of loci in which lineage-specific gene duplications were incorporated.
  2. 1Overlaps between genes that were involved in more than one network were controlled.
  3. Abbreviations: LPT, long-term potentiation; TT, taste transduction; OT, olfactory transduction; TCA, tricarboxylic acid cycle; CA, common ancestor of tetrapods and teleost fishes; 3R, third-round whole genome duplication; NA, not applicable