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Table 3 HaMStR ortholog search in human chromosome 2 ESTs

From: HaMStR: Profile hidden markov model based search for orthologs in ESTs

 

Genes

ESTs

Total a

1106

32647

Max. no. of hits b

81

6288

Not annotated

1032

29293

Orthologs predicted

74

3354

Orthologs (idc)

72

3243

Orthologs (diff c )

2

111

Orthologs (missed c )

9

389

False positive rate

3%

3%

Sensitivity

89%

55%

  1. a Total denotes the number genes/ESTs in the chr2-EST data.
  2. b Intersection of the genes represented in the chr2-ESTs and the human orthologs for the genes in the PoP set obtained with the human proteome data (c.f. Table 2).
  3. c Relative to the results using the human proteome data.