From: An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models
Datasets | Phylogenetic Reconstruction Approaches | ||||
---|---|---|---|---|---|
 | Maximum Likelihood | Bayesian Inference | |||
 | Standard DNA model | Standard DNA model | Doublet model | Mixture model | |
 |  |  | Loops: | Stems: |  |
Complete dataset | GTR + Γ + I | GTR + Γ + I | GTR + Γ + I | RNA6C + Γ + I | CAT-GTR+Γ |
110 taxa |  |  |  | RNA7B + Γ |  |
1326 sites |  |  |  | RNA16A + Γ + I |  |
 |  |  | Loops: | Stems: |  |
Reduced dataset | TN93 + Γ + I | GTR + Γ + I | TN93 + Γ + I | RNA6CA + Γ + I | CAT-GTR+Γ |
88 taxa |  |  |  | RNA7B + Γ |  |
1650 sites |  |  |  | RNA16A + Γ |  |