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Table 1 Information of 82 fungi genomes used in this study

From: A fungal phylogeny based on 82 complete genomes using the composition vector method

Species

Strain

(Sub)Phylum

Source

Download date

Aspergillus clavatus

NRRL1

Ascomycota

BROAD-FGI

Mar. 2008

Aspergillus flavus

NRRL3357

Ascomycota

BROAD-FGI

Mar. 2008

Aspergillus fumigatus

Af293

Ascomycota

BROAD-FGI

Mar. 2008

Aspergillus nidulans

FGSCA4

Ascomycota

BROAD-FGI

Mar. 2008

Aspergillus niger a

ATCC1015

Ascomycota

BROAD-FGI

Mar. 2008

Aspergillus oryzae

RIB40

Ascomycota

BROAD-FGI

Mar. 2008

Aspergillus terreus

NIH2624

Ascomycota

BROAD-FGI

Mar. 2008

Botrytis cinerea

B05.10

Ascomycota

BROAD-FGI

Mar. 2008

Candida albicans

WO-1

Ascomycota

BROAD-FGI

Mar. 2008

Candida albicans

SC5314

Ascomycota

BROAD-FGI

Mar. 2008

Candida glabrata

CBS138

Ascomycota

NCBI

Mar. 2008

Candida guilliermondii

ATCC6260

Ascomycota

BROAD-FGI

Mar. 2008

Candida lusitaniae

ATCC42720

Ascomycota

BROAD-FGI

Mar. 2008

Candida parapsilosis

isolate 317

Ascomycota

BROAD-FGI

Mar. 2008

Candida tropicalis

MYA-3404

Ascomycota

BROAD-FGI

Mar. 2008

Chaetomium globosum

CBS148.51

Ascomycota

BROAD-FGI

Mar. 2008

Coccidioides immitis

RS

Ascomycota

BROAD-FGI

Aug. 2008

Coccidioides immitis

h538.4

Ascomycota

BROAD-FGI

Aug. 2008

Coccidioides immitis

RMSCC2394

Ascomycota

BROAD-FGI

Aug. 2008

Coccidioides immitis

RMSCC3703

Ascomycota

BROAD-FGI

Aug. 2008

Coccidioides posadasii

Silveira

Ascomycota

BROAD-FGI

Aug. 2008

Coccidioides posadasii

RMSCC3488

Ascomycota

BROAD-FGI

Aug. 2008

Cochliobolus heterostrophus

C5

Ascomycota

JGI

Aug. 2008

Paracoccidioides brasiliensis

Pb01

Ascomycota

BROAD-FGI

Aug. 2008

Paracoccidioides brasiliensis

Pb03

Ascomycota

BROAD-FGI

Aug. 2008

Paracoccidioides brasiliensis

Pb18

Ascomycota

BROAD-FGI

Aug. 2008

Debaryomyces hansenii

CBS767

Ascomycota

BROAD-FGI

Mar. 2008

Eremothecium gossypii b

ATCC10895

Ascomycota

NCBI

Mar. 2008

Fusarium graminearum

PH-1

Ascomycota

BROAD-FGI

Mar. 2008

Fusarium oxysporum

f. sp. lycopersici

Ascomycota

BROAD-FGI

Mar. 2008

Fusarium verticillioides

7600

Ascomycota

BROAD-FGI

Mar. 2008

Histoplasma capsulatum c

WU24(NAm1)

Ascomycota

BROAD-FGI

Mar. 2008

Kluyveromyces lactis

NRRLY-1140

Ascomycota

BROAD-FGI

Mar. 2008

Kluyveromyces waltii

NCYC 2644

Ascomycota

RFCG

Mar. 2008

Lodderomyces elongisporus

NRRLYB-4239

Ascomycota

BROAD-FGI

Mar. 2008

Magnaporthe grisea

70–15

Ascomycota

BROAD-FGI

Mar. 2008

Mycosphaerella fijiensis

CIRAD86

Ascomycota

JGI

Mar. 2008

Mycosphaerella graminicola

IPO323

Ascomycota

JGI

Mar. 2008

Nectria haematococca d

MPVI

Ascomycota

JGI

Mar. 2008

Neosartorya fischeri

NRRL181

Ascomycota

BROAD-FGI

Mar. 2008

Neurospora crassa

OR74A

Ascomycota

BROAD-FG

Mar. 2008I

Pyrenophora tritici-repentis

Pt-1C-BFP

Ascomycota

BROAD-FGI

Aug. 2008

Pichia stipitis

CBS6054

Ascomycota

JGI

Mar. 2008

Podospora anserina

DSM980

Ascomycota

RFCG

Mar. 2008

Saccharomyces cerevisiae

S288C

Ascomycota

NCBI

Mar. 2008

Saccharomyces cerevisiae

rm11-1a

Ascomycota

BROAD-FGI

Mar. 2008

Saccharomyces cerevisiae

YJM789

Ascomycota

RFCG

Mar. 2008

Saccharomyces paradoxus

NRRLY-17217

Ascomycota

RFCG

Mar. 2008

Saccharomyces mikatae

IFO1815

Ascomycota

RFCG

Mar. 2008

Saccharomyces kudriavzevii

IFO1802

Ascomycota

RFCG

Mar. 2008

Saccharomyces bayanus

MCYC623

Ascomycota

RFCG

Mar. 2008

Saccharomyces castellii

NRRLY-12630

Ascomycota

RFCG

Mar. 2008

Saccharomyces kluyveri

NRRL Y-12651

Ascomycota

RFCG

Mar. 2008

Schizosaccharomyces japonicus

yFS275

Ascomycota

BROAD-FGI

Mar. 2008

Schizosaccharomyces octosporus

yFS286

Ascomycota

FGR

Aug. 2008

Schizosaccharomyces pombe

972h-

Ascomycota

BROAD-FGI

Mar. 2008

Sclerotinia sclerotiorum

1980

Ascomycota

BROAD-FGI

Mar. 2008

Stagonospora nodorum

SN15

Ascomycota

BROAD-FGI

Mar. 2008

Trichoderma atroviride

IMI202040

Ascomycota

JGI

Aug. 2008

Trichoderma reesei

QM6a

Ascomycota

JGI

Mar. 2008

Trichoderma virens

Gv29-8

Ascomycota

JGI

Mar. 2008

Uncinocarpus reesii

1704

Ascomycota

BROAD-FGI

Mar. 2008

Verticillium dahliae

VdLs.17

Ascomycota

BROAD-FGI

Aug. 2008

Verticillium albo-atrum

VaMs.102

Ascomycota

BROAD-FGI

Aug. 2008

Yarrowia lipolytica

CLIB122

Ascomycota

NCBI

Mar. 2008

Coprinus cinereus

Okayama7#130

Basidiomycota

BROAD-FGI

Mar. 2008

Cryptococcus neoformans

serotypeA, strainH99

Basidiomycota

BROAD-FGI

Mar. 2008

Cryptococcus neoformans

serotypeD, strainJEC21

Basidiomycota

NCBI

Mar. 2008

Cryptococcus gattii

serotypeB, strainWM276

Basidiomycota

RFCG

Mar. 2008

Cryptococcus gattii

serotypeB/C, strainR265

Basidiomycota

RFCG

Mar. 2008

Laccaria bicolor

S238N-H82

Basidiomycota

JGI

Mar. 2008

Malassezia globosa

CBS7966

Basidiomycota

FGR

Aug. 2008

Phanerochaete chrysosporium

RP-78

Basidiomycota

JGI

Mar. 2008

Postia placenta

 

Basidiomycota

JGI

Mar. 2008

Puccinia graminis

f. sp. tritici

Basidiomycota

BROAD-FGI

Mar. 2008

Sporobolomyces roseus

 

Basidiomycota

JGI

Mar. 2008

Ustilago maydis

521

Basidiomycota

BROAD-FGI

Mar. 2008

Batrachochytrium dendrobatidis

JAM81

Chytridiomycota

JGI

Apr. 2008

Batrachochytrium dendrobatidis

JEL423

Chytridiomycota

BROAD-FGI

Mar. 2008

Rhizopus oryzae

RA99–880

Mucoromycotina

BROAD-FGI

Mar. 2008

Phycomyces blakesleeanus

 

Mucoromycotina

JGI

Mar. 2008

Encephalitozoon cuniculi

GB-M1

Microsporidia

NCBI

Mar. 2008

  1. aannotated in house ([See Additional file 3])
  2. dsynonym: Ashbya gossypii
  3. cteleomorph: Ajellomyces capsulata
  4. danamorph: Fusarium solani