Table 3 Comparison and significant test of log-likelihood ratio of dN/dS between genes
From: Evolutionary rate patterns of the Gibberellin pathway genes
Category/Gene | Estimated dN/dS | lnL | Fixed dN/dS | lnL | 2ΔLa |
|---|---|---|---|---|---|
Between groups D and C | |||||
KS1 | 0.386 | -3341.16 | 0.2815 | -3345.46 | 8.59** |
KO2 | 0.177 | -3118.44 | 0.2815 | -3126.22 | 15.56*** |
CPS1 | 0.144 | -3034.22 | 0.2815 | -3049.87 | 31.3*** |
GA2ox4 | 0.129 | -2733.05 | 0.2815 | -2755.45 | 44.8*** |
Within group C | |||||
KO2 | 0.177 | -3118.44 | 0.153 | -3119.19 | 1.50NS |
CPS1 | 0.144 | -3034.22 | 0.153 | -3034.35 | 0.26NS |
GA2ox4 | 0.129 | -2733.05 | 0.153 | -2734.14 | 2.18NS |
Between groups C and B | |||||
KO2 | 0.177 | -3118.44 | 0.1015 | -3128.93 | 20.98*** |
CPS1 | 0.144 | -3034.22 | 0.1015 | -3038.05 | 7.66** |
GA2ox4 | 0.129 | -2733.05 | 0.1015 | -2735.16 | 4.21* |
KAO | 0.074 | -3071.99 | 0.1015 | -3075.8 | 7.62** |
GA3ox2 | 0.073 | -2210.46 | 0.1015 | -2213.21 | 5.50* |
Within group B | |||||
KAO | 0.074 | -3071.99 | 0.0735 | -3071.99 | 0NS |
GA3ox2 | 0.073 | -2210.46 | 0.0735 | -2210.46 | 0NS |
Between groups B and A | |||||
KAO | 0.074 | -3071.99 | 0.0475 | -3078.8 | 13.62*** |
GA3ox2 | 0.073 | -2210.46 | 0.0475 | -2214.72 | 8.52** |
GA20ox2 | 0.022 | -1373.16 | 0.0475 | -1379.06 | 11.8*** |