TY - JOUR AU - Patient, R. M. J. D. PY - 2002 DA - 2002// TI - The GATA family (vertebrates and invertebrates) JO - Curr Opin Genetics Dev VL - 12 UR - https://doi.org/10.1016/S0959-437X(02)00319-2 DO - 10.1016/S0959-437X(02)00319-2 ID - Patient2002 ER - TY - JOUR AU - Afouda, B. AU - Ciau-Uitz, A. AU - Patient, R. PY - 2005 DA - 2005// TI - GATA4, 5 and 6 mediate TGFbeta maintenance of endodermal gene expression in Xenopusembryos JO - Development VL - 132 UR - https://doi.org/10.1242/dev.01647 DO - 10.1242/dev.01647 ID - Afouda2005 ER - TY - JOUR AU - Shoichet, S. A. AU - Malik, T. H. AU - Rothman, J. H. AU - Shivdasani, R. A. PY - 2000 DA - 2000// TI - Action of the Caenorhabditis elegans GATA factor END-1 in Xenopus suggests that similar mechanisms initiate endoderm development in ecdysozoa and vertebrates JO - Proc Natl Acad Sci USA VL - 97 UR - https://doi.org/10.1073/pnas.97.8.4076 DO - 10.1073/pnas.97.8.4076 ID - Shoichet2000 ER - TY - JOUR AU - Martindale, M. Q. AU - Finnerty, J. R. AU - Henry, J. Q. PY - 2002 DA - 2002// TI - The Radiata and the evolutionary origins of the bilaterian body plan JO - Molecular Phylogenetics and Evolution VL - 24 UR - https://doi.org/10.1016/S1055-7903(02)00208-7 DO - 10.1016/S1055-7903(02)00208-7 ID - Martindale2002 ER - TY - JOUR AU - Lowry, J. A. AU - Atchley, W. R. PY - 2000 DA - 2000// TI - Molecular evolution of the GATA family of transcription factors: Conservation within the DNA-binding domain JO - J Mol Evol VL - 50 ID - Lowry2000 ER - TY - JOUR AU - Gillis, W. Q. AU - Bowerman, B. A. AU - Schneider, S. Q. PY - 2008 DA - 2008// TI - The evolution of protostome GATA factors: molecular phylogenetics, synteny, and intron/exon structure reveal orthologous relationships JO - BMC Evol Biol VL - 8 UR - https://doi.org/10.1186/1471-2148-8-112 DO - 10.1186/1471-2148-8-112 ID - Gillis2008 ER - TY - JOUR AU - Gillis, W. J. AU - Bowerman, B. AU - Schneider, S. Q. PY - 2007 DA - 2007// TI - Ectoderm- and endomesoderm-specific GATA transcription factors in the marine annelid Platynereis dumerilli JO - Evolution & Development VL - 9 UR - https://doi.org/10.1111/j.1525-142X.2006.00136.x DO - 10.1111/j.1525-142X.2006.00136.x ID - Gillis2007 ER - TY - JOUR AU - He, C. AU - Cheng, H. AU - Zhou, R. PY - 2007 DA - 2007// TI - GATA family of transcription factors of vertebrates: phylogenetics and chromosomal synteny JO - J Biosci VL - 32 UR - https://doi.org/10.1007/s12038-007-0136-7 DO - 10.1007/s12038-007-0136-7 ID - He2007 ER - TY - JOUR AU - Ayala, F. J. AU - Rzhetsky, A. AU - Ayala, F. J. PY - 1998 DA - 1998// TI - Origin of the metazoan phyla: Molecular clocks confirm paleontological estimates JO - Proceedings of the National Academy of Sciences of the United States of America VL - 95 UR - https://doi.org/10.1073/pnas.95.2.606 DO - 10.1073/pnas.95.2.606 ID - Ayala1998 ER - TY - JOUR AU - Bininda-Emonds, O. R. P. AU - Cardillo, M. AU - Jones, K. E. AU - MacPhee, R. D. E. AU - Beck, R. M. D. AU - Grenyer, R. AU - Price, S. A. AU - Vos, R. A. AU - Gittleman, J. L. AU - Purvis, A. PY - 2007 DA - 2007// TI - The delayed rise of present-day mammals JO - Nature VL - 446 UR - https://doi.org/10.1038/nature05634 DO - 10.1038/nature05634 ID - Bininda-Emonds2007 ER - TY - JOUR AU - Blair, J. E. AU - Hedges, S. B. PY - 2005 DA - 2005// TI - Molecular phylogeny and divergence times of deuterostome animals JO - Mol Biol Evol VL - 22 UR - https://doi.org/10.1093/molbev/msi225 DO - 10.1093/molbev/msi225 ID - Blair2005 ER - TY - JOUR AU - Douzery, E. J. P. AU - Snell, E. A. AU - Bapteste, E. AU - Delsuc, F. AU - Philippe, H. PY - 2004 DA - 2004// TI - The timing of eukaryotic evolution: Does a relaxed molecular clock reconcile proteins and fossils? JO - Proceedings of the National Academy of Sciences of the United States of America VL - 101 UR - https://doi.org/10.1073/pnas.0403984101 DO - 10.1073/pnas.0403984101 ID - Douzery2004 ER - TY - JOUR AU - Hallstrom, B. M. AU - Janke, A. PY - 2009 DA - 2009// TI - Gnathostome phylogenomics utilizing lungfish EST sequences JO - Mol Biol Evol VL - 26 UR - https://doi.org/10.1093/molbev/msn271 DO - 10.1093/molbev/msn271 ID - Hallstrom2009 ER - TY - JOUR AU - Peterson, K. J. AU - Cotton, J. A. AU - Gehling, J. G. AU - Pisani, D. PY - 2008 DA - 2008// TI - The Ediacaran emergence of bilaterians: congruence between the genetic and the geological fossil records JO - Philos Trans R Soc Lond B Biol Sci VL - 363 UR - https://doi.org/10.1098/rstb.2007.2233 DO - 10.1098/rstb.2007.2233 ID - Peterson2008 ER - TY - JOUR AU - Peterson, K. J. AU - Lyons, J. B. AU - Nowak, K. S. AU - Takacs, C. M. AU - Wargo, M. J. AU - McPeek, M. A. PY - 2004 DA - 2004// TI - Estimating metazoan divergence times with a molecular clock JO - Proceedings of the National Academy of Sciences of the United States of America VL - 101 UR - https://doi.org/10.1073/pnas.0401670101 DO - 10.1073/pnas.0401670101 ID - Peterson2004 ER - TY - JOUR AU - Sarropoulou, E. AU - Nousdili, D. AU - Magoulas, A. AU - Kotoulas, G. PY - 2008 DA - 2008// TI - Linking the genomes of nonmodel teleosts through comparative genomics JO - Mar Biotechnol (NY) VL - 10 UR - https://doi.org/10.1007/s10126-007-9066-5 DO - 10.1007/s10126-007-9066-5 ID - Sarropoulou2008 ER - TY - JOUR AU - Steinke, D. AU - Salzburger, W. AU - Meyer, A. PY - 2006 DA - 2006// TI - Novel relationships among ten fish model species revealed based on a phylogenomic analysis using ESTs JO - J Mol Evol VL - 62 UR - https://doi.org/10.1007/s00239-005-0170-8 DO - 10.1007/s00239-005-0170-8 ID - Steinke2006 ER - TY - JOUR AU - Philippe, H. AU - Lartillot, N. AU - Brinkmann, H. PY - 2005 DA - 2005// TI - Multigene Analyses of Bilaterian Animals Corroborate the Monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia JO - Mol Biol Evol VL - 22 UR - https://doi.org/10.1093/molbev/msi111 DO - 10.1093/molbev/msi111 ID - Philippe2005 ER - TY - JOUR AU - Passamaneck, Y. J. AU - Di Gregorio, A. PY - 2005 DA - 2005// TI - Ciona intestinalis: Chordate development made simple JO - Developmental Dynamics VL - 233 UR - https://doi.org/10.1002/dvdy.20300 DO - 10.1002/dvdy.20300 ID - Passamaneck2005 ER - TY - JOUR AU - Escriva, H. AU - Manzon, L. AU - Youson, J. AU - Laudet, V. PY - 2002 DA - 2002// TI - Analysis of lamprey and hagfish genes reveals a complex history of gene duplications during early vertebrate evolution JO - Molecular Biology and Evolution VL - 19 UR - https://doi.org/10.1093/oxfordjournals.molbev.a004207 DO - 10.1093/oxfordjournals.molbev.a004207 ID - Escriva2002 ER - TY - JOUR AU - Kuraku, S. AU - Meyer, A. AU - Kuratani, S. PY - 2009 DA - 2009// TI - Timing of Genome Duplications Relative to the Origin of the Vertebrates: Did Cyclostomes Diverge before or after? JO - Mol Biol Evol VL - 26 UR - https://doi.org/10.1093/molbev/msn222 DO - 10.1093/molbev/msn222 ID - Kuraku2009 ER - TY - JOUR AU - Amores, A. AU - Force, A. AU - Yan, Y. L. AU - Joly, L. AU - Amemiya, C. AU - Fritz, A. AU - Ho, R. K. AU - Langeland, J. AU - Prince, V. AU - Wang, Y. L. PY - 1998 DA - 1998// TI - Zebrafish hox clusters and vertebrate genome evolution JO - Science VL - 282 UR - https://doi.org/10.1126/science.282.5394.1711 DO - 10.1126/science.282.5394.1711 ID - Amores1998 ER - TY - JOUR AU - Postlethwait, J. H. AU - Yan, Y. L. AU - Gates, M. A. AU - Horne, S. AU - Amores, A. AU - Brownlie, A. AU - Donovan, A. AU - Egan, E. S. AU - Force, A. AU - Gong, Z. Y. PY - 1998 DA - 1998// TI - Vertebrate genome evolution and the zebrafish gene map (vol 18, pg 345, 1998) JO - Nature Genetics VL - 19 UR - https://doi.org/10.1038/1000 DO - 10.1038/1000 ID - Postlethwait1998 ER - TY - JOUR AU - Wittbrodt, J. AU - Meyer, A. AU - Schartl, M. PY - 1998 DA - 1998// TI - More genes in fish? JO - Bioessays VL - 20 UR - https://doi.org/3.0.CO;2-3 DO - 3.0.CO;2-3 ID - Wittbrodt1998 ER - TY - JOUR AU - Force, A. AU - Lynch, M. AU - Pickett, F. B. AU - Amores, A. AU - Yan, Y. L. AU - Postlethwait, J. PY - 1999 DA - 1999// TI - Preservation of duplicate genes by complementary, degenerative mutations JO - Genetics VL - 151 ID - Force1999 ER - TY - BOOK AU - Ohno, S. PY - 1970 DA - 1970// TI - Evolution by gene duplication PB - Springer-Verlag CY - New York UR - https://doi.org/10.1007/978-3-642-86659-3 DO - 10.1007/978-3-642-86659-3 ID - Ohno1970 ER - TY - JOUR AU - Ohno, S. AU - Wolf, U. AU - Atkin, N. B. PY - 1968 DA - 1968// TI - Evolution from Fish to Mammals by Gene Duplication JO - Hereditas-Genetiskt Arkiv VL - 59 UR - https://doi.org/10.1111/j.1601-5223.1968.tb02169.x DO - 10.1111/j.1601-5223.1968.tb02169.x ID - Ohno1968 ER - TY - JOUR AU - Wolfe, K. H. PY - 2001 DA - 2001// TI - Yesterday's polyploids and the mystery of diploidization JO - Nature Reviews Genetics VL - 2 UR - https://doi.org/10.1038/35072009 DO - 10.1038/35072009 ID - Wolfe2001 ER - TY - JOUR AU - Catchen, J. M. AU - Conery, J. S. AU - Postlethwait, J. H. PY - 2008 DA - 2008// TI - Inferring ancestral gene order JO - Methods Mol Biol VL - 452 UR - https://doi.org/10.1007/978-1-60327-159-2_17 DO - 10.1007/978-1-60327-159-2_17 ID - Catchen2008 ER - TY - JOUR AU - Kapustin, Y. AU - Souvorov, A. AU - Tatusova, T. AU - Lipman, D. PY - 2008 DA - 2008// TI - Splign: algorithms for computing spliced alignments with identification of paralogs JO - Biol Direct VL - 3 UR - https://doi.org/10.1186/1745-6150-3-20 DO - 10.1186/1745-6150-3-20 ID - Kapustin2008 ER - TY - JOUR AU - Postlethwait, J. H. PY - 2007 DA - 2007// TI - The zebrafish genome in context: ohnologs gone missing JO - J Exp Zoolog B Mol Dev Evol VL - 308 UR - https://doi.org/10.1002/jez.b.21137 DO - 10.1002/jez.b.21137 ID - Postlethwait2007 ER - TY - JOUR AU - Dehal, P. AU - Boore, J. L. PY - 2005 DA - 2005// TI - Two rounds of whole genome duplication in the ancestral vertebrate JO - PLoS Biol VL - 3 UR - https://doi.org/10.1371/journal.pbio.0030314 DO - 10.1371/journal.pbio.0030314 ID - Dehal2005 ER - TY - JOUR AU - Putnam, N. H. AU - Butts, T. AU - Ferrier, D. E. K. AU - Furlong, R. F. AU - Hellsten, U. AU - Kawashima, T. AU - Robinson-Rechavi, M. AU - Shoguchi, E. AU - Terry, A. AU - Yu, J. K. PY - 2008 DA - 2008// TI - The amphioxus genome and the evolution of the chordate karyotype JO - Nature VL - 453 UR - https://doi.org/10.1038/nature06967 DO - 10.1038/nature06967 ID - Putnam2008 ER - TY - JOUR AU - Peterkin, T. AU - Gibson, A. AU - Loose, M. AU - Patient, R. PY - 2005 DA - 2005// TI - The roles of GATA-4, -5 and -6 in vertebrate heart development JO - Semin Cell Dev Biol VL - 16 UR - https://doi.org/10.1016/j.semcdb.2004.10.003 DO - 10.1016/j.semcdb.2004.10.003 ID - Peterkin2005 ER - TY - JOUR AU - Peterkin, T. AU - Gibson, A. AU - Patient, R. PY - 2007 DA - 2007// TI - Redundancy and evolution of GATA factor requirements in development of the myocardium JO - Dev Biol VL - 311 UR - https://doi.org/10.1016/j.ydbio.2007.08.018 DO - 10.1016/j.ydbio.2007.08.018 ID - Peterkin2007 ER - TY - JOUR AU - Nardelli, J. AU - Thiesson, D. AU - Fujiwara, Y. AU - Tsai, F. Y. AU - Orkin, S. H. PY - 1999 DA - 1999// TI - Expression and genetic interaction of transcription factors GATA-2 and GATA-3 during development of the mouse central nervous system JO - Dev Biol VL - 210 UR - https://doi.org/10.1006/dbio.1999.9278 DO - 10.1006/dbio.1999.9278 ID - Nardelli1999 ER - TY - CHAP AU - Woollard, A. PY - 2005 DA - 2005// TI - Gene duplications and genetic redundancy in C. elegans BT - Wormbook, ed ID - Woollard2005 ER - TY - JOUR AU - Cameron, C. B. AU - Garey, J. R. AU - Swalla, B. J. PY - 2000 DA - 2000// TI - Evolution of the chordate body plan: New insights from phylogenetic analyses of deuterostome phyla JO - Proceedings of the National Academy of Sciences of the United States of America VL - 97 UR - https://doi.org/10.1073/pnas.97.9.4469 DO - 10.1073/pnas.97.9.4469 ID - Cameron2000 ER - TY - JOUR AU - Holland, L. Z. AU - Holland, N. D. PY - 2001 DA - 2001// TI - Evolution of neural crest and placodes: amphioxus as a model for the ancestral vertebrate? JO - Journal of Anatomy VL - 199 UR - https://doi.org/10.1046/j.1469-7580.199.parts1-2.8.x DO - 10.1046/j.1469-7580.199.parts1-2.8.x ID - Holland2001 ER - TY - JOUR AU - Holland, N. D. AU - Chen, J. Y. PY - 2001 DA - 2001// TI - Origin and early evolution of the vertebrates: new insights from advances in molecular biology, anatomy, and palaeontology JO - Bioessays VL - 23 UR - https://doi.org/3.0.CO;2-5 DO - 3.0.CO;2-5 ID - Holland2001 ER - TY - JOUR AU - Lowe, C. J. PY - 2008 DA - 2008// TI - Molecular genetic insights into deuterostome evolution from the direct-developing hemichordate Saccoglossus kowalevskii JO - Philosophical Transactions of the Royal Society B-Biological Sciences VL - 363 UR - https://doi.org/10.1098/rstb.2007.2247 DO - 10.1098/rstb.2007.2247 ID - Lowe2008 ER - TY - JOUR AU - Tatusova, T. A. AU - Madden, T. L. PY - 1999 DA - 1999// TI - BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences JO - FEMS Microbiol Lett VL - 174 UR - https://doi.org/10.1111/j.1574-6968.1999.tb13575.x DO - 10.1111/j.1574-6968.1999.tb13575.x ID - Tatusova1999 ER - TY - JOUR AU - Langeland, J. A. AU - Tomsa, J. M. AU - Jackman, W. R. AU - Kimmel, C. B. PY - 1998 DA - 1998// TI - An amphioxus snail gene: Expression in paraxial mesoderm and neural plate suggests a conserved role in patterning the chordate embryo JO - Development Genes and Evolution VL - 208 UR - https://doi.org/10.1007/s004270050216 DO - 10.1007/s004270050216 ID - Langeland1998 ER - TY - JOUR AU - Huang, X. AU - Madan, A. PY - 1999 DA - 1999// TI - CAP3: A DNA sequence assembly program JO - Genome Res VL - 9 UR - https://doi.org/10.1101/gr.9.9.868 DO - 10.1101/gr.9.9.868 ID - Huang1999 ER - TY - JOUR AU - Edgar, R. C. PY - 2004 DA - 2004// TI - MUSCLE: multiple sequence alignment with high accuracy and high throughput JO - Nucleic Acids Research VL - 32 UR - https://doi.org/10.1093/nar/gkh340 DO - 10.1093/nar/gkh340 ID - Edgar2004 ER - TY - JOUR AU - Huelsenbeck, J. P. AU - Ronquist, F. PY - 2001 DA - 2001// TI - MRBAYES: Bayesian inference of phylogenetic trees JO - Bioinformatics VL - 17 UR - https://doi.org/10.1093/bioinformatics/17.8.754 DO - 10.1093/bioinformatics/17.8.754 ID - Huelsenbeck2001 ER - TY - JOUR AU - Anisimova, M. AU - Gascuel, O. PY - 2006 DA - 2006// TI - Approximate Likelihood-Ratio Test for Branches: A Fast, Accurate, and Powerful Alternative JO - Systematic Biology VL - 55 UR - https://doi.org/10.1080/10635150600755453 DO - 10.1080/10635150600755453 ID - Anisimova2006 ER - TY - JOUR AU - Guindon, S. e. p. AU - Gascuel, O. PY - 2003 DA - 2003// TI - A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood JO - Systematic Biology VL - 52 UR - https://doi.org/10.1080/10635150390235520 DO - 10.1080/10635150390235520 ID - Guindon2003 ER -