BMC Ecology and Evolution

Table 1 Conservation of GATA motifs

From: Whole genome duplications and expansion of the vertebrate GATA transcription factor gene family

	AA Percent Shared Identity
	123_N1		123_N2		123_N3		123_N4		123_N5	Dual-ZF Domain			123_C1		123_C2
Gene	Pd	Nv	Pd	Nv	Pd	Nv	Pd	Nv	Pd	Pd123	Pd456	Nv	Pd	Nv	Pd	Nv
BfGATA123	10	30	27	47	53	61	58	52	29	94	82	90	11	17	2	7
SkGATA123	0	14	31	50	56	61	64	64	38	77	72	74	-	-	-	-
SpGATAc	-	-	7	14	56	56	70	58	21	88	81	84	17	17	25	11
CiGATAb	-	-	10	27	7	7	44	38	21	90	81	84	11	17	33	11
HsGATA1	-	-	-	-	-	-	-	-	-	82	74	77	-	-	-	-
HsGATA2	11	18	29	50	48	33	58	64	39	92	82	86	29	23	30	12
HsGATA3	6	17	38	31	52	34	65	58	36	92	82	87	41	5	33	25
DrGATA2a	14	17	20	40	56	41	55	50	37				33	16	17	9
DrerGATA2b	5	11	17	38	32	25	55	38	29
DrGATA3	4	24	35	27	40	26	64	58	34				35	11	30	16
DrerGATA1a	-		-	-	15	16	-	-	25
DrerGATA1b	8	17	-	-	-	-	-	-	21
	456_N1		456_N2		456_N3		456_N4			Dual-ZF Domain
Gene	Pd	Nv	Pd	Nv	Pd	Nv	Pd			Pd123	Pd456	Nv
BfGATA456	20	16	60	20	41	37	8			87	90	82
SkGATA456	13	15	56	23	41	32	0			82	88	81
SpGATAe	18	15	46	10	17	25	17			80	84	80
CiGATAa			21	10	13	14	0			57	56	58
HsGATA4	-	-	43	18	40	21	13			83	90	79
HsGATA5	-	-	35	16	32	12	13			77	84	76
HsGATA6	-	-	50	12	34	22	17			76	84	74
DrGATA4			44	13	34	16	17
DrGATA5			50	10	20	16	30
DrGATA6			46	13	31	20	17

The percent identity shared between motifs and conserved domains from cephalochordate (Bf), hemichordate (Sk), and echinoderm (Sp) GATAs compared to polychaete (Pd) and sea anemone (Nv) GATAs. Scores based upon pairwise alignment percent identity scores in individual alignments.

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ISSN: 2730-7182

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