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Table 2 Log-likelihoods of the two competing trees of the Microsporidia data [42] calculated with PROCOV under the general covarion model (GCM) and the RAS model, respectively, and with QmmRAxML under the class frequency mixture model (cF) [47].

From: PROCOV: maximum likelihood estimation of protein phylogeny under covarion models and site-specific covarion pattern analysis

Tree PROCOV QmmRAxML
  GCM+WAG RAS+WAG cF+RAS+WAG
Microsporidia-fungi-clade -737,304.13 -742,093.43 -731,758.97
Microsporidia-archaea-clan -741,721.00 -741,895.93 -731,780.03
Log likelihood difference between the two trees 4416.87 -197.50 21.06