From: PROCOV: maximum likelihood estimation of protein phylogeny under covarion models and site-specific covarion pattern analysis
Tree
PROCOV
QmmRAxML
GCM+WAG
RAS+WAG
cF+RAS+WAG
Microsporidia-fungi-clade
-737,304.13
-742,093.43
-731,758.97
Microsporidia-archaea-clan
-741,721.00
-741,895.93
-731,780.03
Log likelihood difference between the two trees
4416.87
-197.50
21.06