Skip to main content

Advertisement

Table 1 Catalogue of Spätzle genes found in the Daphnia pulexgenome.

From: The genome sequence of the protostome Daphnia pulexencodes respective orthologues of a neurotrophin, a Trk and a p75NTR: Evolution of neurotrophin signaling components and related proteins in the bilateria

Gene Scaffold coordinates Gene predictions ESTs
Dappu-Spz 3:3255174-3258541 Dappu-221000 [GenBank:FE349417.1, GenBank:FE349418.1, GenBank:FE355503.1, GenBank:FE355502.1]
Dappu-Spz2 20:559252-563545 Manual prediction [GenBank:FE361273.1, GenBank:FE325461.1, GenBank:FE325462.1, GenBank:FE413050.1, GenBank:FE413051.1]
Dappu-Spz3 13:218704-222507 Dappu-314968 [GenBank:FE283425.1]
Dappu-Spz5 98:491231-493718 Dappu1-228297 [GenBank:FE334520.1, GenBank:FE334519.1, GenBank:FE389946.1, GenBank:FE389945.1, GenBank:FE380627.1, GenBank:FE380626.1, GenBank:FE376962.1]
Dappu-Spz6 21:959226-964216 Dappu-224270 [GenBank:FE399977.1, GenBank:FE399976.1, GenBank:FE359418.1, GenBank:FE359417.1, GenBank:FE407285.1, GenBank:FE407284.1] Daphnia magna: [GenBank:DW724455.1]
Dappu-Spz7A 9:533308-534396 Dappu-313483 [GenBank:FE363720.1, GenBank:FE363719.1, GenBank:FE357035.1]
Dappu-Spz7B 9:513290-514485 Dappu-313475 [GenBank:FE367435.1, GenBank:FE367434.1]
Dappu-Spz7C 9:898918-899886 Dappu-313565 [GenBank:FE380921.1, GenBank:FE380920.1, GenBank:FE309270.1, GenBank:FE309269.1]
Dappu-Spz7D 9:986553-987770 9:1028429-1029516 697:5567-6654 Dappu-313586* Dappu-313593* Dappu-335681* [GenBank:FE319054.1, GenBank:FE319053.1, GenBank:FE385764.1, GenBank:FE385763.1, GenBank:FE355807.1]
Dappu-Spz7E 6553:13-1284 Dappu-123301 [GenBank:FE352671.1, GenBank:FE299965.1, GenBank:FE299964.1]
Dappu-Spz7F 9:488906-490265 Dappu-309050 Daphnia magna: [GenBank:BJ926602.1, GenBank:BJ925927.1, GenBank:BJ925817.1, GenBank:BJ928192.1, GenBank:BJ926968.1, GenBank:FD467132.1, GenBank:DW724571.1]
Dappu-Spz8A 51:574691-575397 Dappu-323037 Daphnia magna: [GenBank:EG565383.1, GenBank:BJ928378.1]
Dappu-Spz8B 190166-191014 Dappu-313416 [GenBank:FE328688.1, GenBank:FE328687.1, GenBank:FE322916.1, GenBank:FE322915.1, GenBank:FE416776.1, GenBank:FE416775.1, GenBank:FE420380.1, GenBank:FE420379.1, GenBank:FE353236.1, GenBank:FE353235.1]
Dappu-Spz8C 9:531897-532563 Dappu-313482 [GenBank:FE303670.1, GenBank:FE303669.1, GenBank:FE394292.1, GenBank:FE394291.1, GenBank:FE400682.1, GenBank:FE400681.1]
Dappu-Spz8D 9:530904-531771 Dappu-313481 [GenBank:FE416560.1, GenBank:FE416559.1]
Dappu-Spz8E 46:449347-450049 Dappu-106989 [GenBank:FE373132.1]
Dappu-Spz8F 9:515269-516146 Dappu-313476 [GenBank:FE385611.1, GenBank:FE385610.1, GenBank:FE300572.1, GenBank:FE300571.1, GenBank:FE386869.1, GenBank:FE386868.1]
Dappu-Spz8G 9:1027151-1027987 9:1043641-1044429 9:988211-989048 9:820325-820906 9:803754-804335 697:4289-5125 Dappu-313592* Dappu-313596* Dappu-313587* Dappu-313556* Dappu-313550* Dappu335680* [GenBank:FE383908.1, GenBank:FE383907.1]
Dappu-Spz8H 51:580305-581023 Dappu-323043 [GenBank:FE347509.1, GenBank:FE347508.1]
  1. Only Spätzle gene predictions with supporting ESTs are reported. An asterisk (*) indicates identical sequences in multiple copies on the same or different scaffolds. All EST numbers are for Daphnia pulex unless otherwise stated by Daphnia magna.