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Table 1 Catalogue of Spätzle genes found in the Daphnia pulexgenome.

From: The genome sequence of the protostome Daphnia pulexencodes respective orthologues of a neurotrophin, a Trk and a p75NTR: Evolution of neurotrophin signaling components and related proteins in the bilateria

Gene

Scaffold coordinates

Gene predictions

ESTs

Dappu-Spz

3:3255174-3258541

Dappu-221000

[GenBank:FE349417.1, GenBank:FE349418.1, GenBank:FE355503.1, GenBank:FE355502.1]

Dappu-Spz2

20:559252-563545

Manual prediction

[GenBank:FE361273.1, GenBank:FE325461.1, GenBank:FE325462.1, GenBank:FE413050.1, GenBank:FE413051.1]

Dappu-Spz3

13:218704-222507

Dappu-314968

[GenBank:FE283425.1]

Dappu-Spz5

98:491231-493718

Dappu1-228297

[GenBank:FE334520.1, GenBank:FE334519.1, GenBank:FE389946.1, GenBank:FE389945.1, GenBank:FE380627.1, GenBank:FE380626.1, GenBank:FE376962.1]

Dappu-Spz6

21:959226-964216

Dappu-224270

[GenBank:FE399977.1, GenBank:FE399976.1, GenBank:FE359418.1, GenBank:FE359417.1, GenBank:FE407285.1, GenBank:FE407284.1]

Daphnia magna: [GenBank:DW724455.1]

Dappu-Spz7A

9:533308-534396

Dappu-313483

[GenBank:FE363720.1, GenBank:FE363719.1, GenBank:FE357035.1]

Dappu-Spz7B

9:513290-514485

Dappu-313475

[GenBank:FE367435.1, GenBank:FE367434.1]

Dappu-Spz7C

9:898918-899886

Dappu-313565

[GenBank:FE380921.1, GenBank:FE380920.1, GenBank:FE309270.1, GenBank:FE309269.1]

Dappu-Spz7D

9:986553-987770

9:1028429-1029516

697:5567-6654

Dappu-313586*

Dappu-313593*

Dappu-335681*

[GenBank:FE319054.1, GenBank:FE319053.1, GenBank:FE385764.1, GenBank:FE385763.1, GenBank:FE355807.1]

Dappu-Spz7E

6553:13-1284

Dappu-123301

[GenBank:FE352671.1, GenBank:FE299965.1, GenBank:FE299964.1]

Dappu-Spz7F

9:488906-490265

Dappu-309050

Daphnia magna: [GenBank:BJ926602.1, GenBank:BJ925927.1, GenBank:BJ925817.1, GenBank:BJ928192.1, GenBank:BJ926968.1, GenBank:FD467132.1, GenBank:DW724571.1]

Dappu-Spz8A

51:574691-575397

Dappu-323037

Daphnia magna: [GenBank:EG565383.1, GenBank:BJ928378.1]

Dappu-Spz8B

190166-191014

Dappu-313416

[GenBank:FE328688.1, GenBank:FE328687.1, GenBank:FE322916.1, GenBank:FE322915.1, GenBank:FE416776.1, GenBank:FE416775.1, GenBank:FE420380.1, GenBank:FE420379.1, GenBank:FE353236.1, GenBank:FE353235.1]

Dappu-Spz8C

9:531897-532563

Dappu-313482

[GenBank:FE303670.1, GenBank:FE303669.1, GenBank:FE394292.1, GenBank:FE394291.1, GenBank:FE400682.1, GenBank:FE400681.1]

Dappu-Spz8D

9:530904-531771

Dappu-313481

[GenBank:FE416560.1, GenBank:FE416559.1]

Dappu-Spz8E

46:449347-450049

Dappu-106989

[GenBank:FE373132.1]

Dappu-Spz8F

9:515269-516146

Dappu-313476

[GenBank:FE385611.1, GenBank:FE385610.1, GenBank:FE300572.1, GenBank:FE300571.1, GenBank:FE386869.1, GenBank:FE386868.1]

Dappu-Spz8G

9:1027151-1027987

9:1043641-1044429

9:988211-989048

9:820325-820906

9:803754-804335

697:4289-5125

Dappu-313592*

Dappu-313596*

Dappu-313587*

Dappu-313556*

Dappu-313550*

Dappu335680*

[GenBank:FE383908.1, GenBank:FE383907.1]

Dappu-Spz8H

51:580305-581023

Dappu-323043

[GenBank:FE347509.1, GenBank:FE347508.1]

  1. Only Spätzle gene predictions with supporting ESTs are reported. An asterisk (*) indicates identical sequences in multiple copies on the same or different scaffolds. All EST numbers are for Daphnia pulex unless otherwise stated by Daphnia magna.