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Table 3 Results of Templeton tests with most parsimonious (MP) trees and SH tests with maximum likelihood (ML) trees.

From: Cyto-nuclear discordance in the phylogeny of Ficus section Galoglychia and host shifts in plant-pollinator associations

  Templeton test SH test
Topology Length P-Value -LnL P-Value
Chloroplast Data     
   Chloroplast 143   5956.50  
   Nuclear 195 < 0.001 6241.39 < 0.001
   chloroplast - F. trichopoda monophyletic 147 0.045 5981.30 0.021
   chloroplast - F. craterostoma monophyletic 152 0.003 5999.10 0.001
   chloroplast - F. densistipulata within Cyathistipulae 144 0.564 5961.60 0.280
   ( Americana , ( Galoglychia, Caulocarpae ,( Cyathistipulae + Crassicostae + Chlamydodorae + Platyphyllae )) 226   6061.80  
   (Americana, (Galoglychia + Caulocarpae + Cyathistipulae + Crassicostae), (Chlamydodorae + Platyphyllae)) 276 0.016 6340.26 0.005
Nuclear Data     
   Nuclear 539   5170.68  
   Chloroplast 741 < 0.001 6091.60 < 0.001
   nuclear - F. trichopoda 2 within Chlamydodorae 560 < 0.001 5259.70 0.000
   nuclear - F. craterostoma 2 within Cyathistipulae and Crassicostae 560 < 0.001 5211.23 0.001
   nuclear - F. densistipulata within Chlamydodorae 559 < 0.001 5256.40 < 0.001
   ( Americana , ( Galoglychia + Caulocarpae + Cyathistipulae + Crassicostae ), ( Chlamydodorae + Platyphyllae )) 818   5407.92  
   (Americana, (Galoglychia, Caulocarpae, (Cyathistipulae + Crassicostae + Chlamydodorae + Platyphyllae)) 962 0.001 5890.20 0.002
  1. P-values of a given line correspond to the test comparing the length (MP trees) or the likelihood (ML trees) of the topology of the corresponding line with the length/likelihood of the above topology written in bold characters. In the topology description, "," indicates that branching between subsections are left unresolved, and "+" indicates that the branching among and between subsections are left unresolved. Likelihoods were computed with PAUP.