Nme protein family evolutionary history, a vertebrate perspective

Desvignes, Thomas; Pontarotti, Pierre; Fauvel, Christian; Bobe, Julien

doi:10.1186/1471-2148-9-256

BMC Ecology and Evolution

Table 1 Group I Nme proteins: names and symbols by species, accession numbers and corresponding chromosomal location

From: Nme protein family evolutionary history, a vertebrate perspective

	Species	Name	Other names	GenBank Acc #	Ensembl Acc #	Localisation	Position
	*C. intestinalis*	NmeGp1CiA	NDK B	XP_002123476	ENSCINP00000011619	Chr 8q	5,908,347-5,908,808
	*C. intestinalis*	NmeGp1CiB		XP_002121438	ENSCINP00000002194	Chr 2q	7,888,026-7,888,562
*NmeGp1*	*B. floridae*	NmeGp1BfA		XP_002206993		Chr Un	116,102,546-116,104,838
	*B. floridae*	NmeGp1BfB		XP_002206992		Chr Un	116,092,575-116,094,429
	*P. marinus*	Nme2		FD722053*
	*P. marinus*	Nme3/4		FD718234*		Contig24671	6,345-8,952
	*H. sapiens*	NME1	NDK A; NM23-H1; GAAD	NP_937818	ENSP00000337060	Chr 17	46,585,919-46,594,449
	*M. musculus*	Nme1	NDK A; Nm23-M1	NP_032730	ENSMUSP00000021220	Chr 11	93,820,547-93,829,574
	*B. taurus*	Nme1	NDK A; NDKA2; NBR-A	NP_991387	ENSBTAP00000006104	Chr 19	36,634,791-36,645,841
*Nme1*	*M. domestica*	Nme1	LOC100012868	XP_001363771	ENSMODP00000015750	Chr 2	184,090,725-184,104,175
	*O. anatinus*	Nme1			ENSOANP00000018628	SuperContig 18222	1,054-2,769
	*G. gallus*	Nme1	Nm23A	XP_420097	ENSGALP00000011811	Chr18	9,930,932-9,933,309
	*A. carolinensis*	Nme1			ENSACAESTP00000008767	Scaffold_268	1,710,978-1,717,896
	*H. sapiens*	NME2	NDK B; NM23-H2; PUF	NP_001018149	ENSP00000376888	Chr 17	46,598,821-46,604,103
	*M. musculus*	Nme2	NDK B; Nm23-M2	NP_032731	ENSMUSP00000021217	Chr 11	93,811,130-93,817,195
	*B. taurus*	Nme2	NDK B; PUF	NP_001069844		Chr 19	36,625,295-36,629,092
*Nme2*	*M. domestica*	Nme2	NDK B	XP_001363684	ENSMODP00000015743^†	Chr 2	184,076,307-184,081,978
	*O. anatinus*	Nme2			ENSOANP00000018629	SuperContig 18222	6,818-8,864
	*G. gallus*	Nme2	CNDPK; NDK_CHICK	NP_990378	ENSGALP00000034078	Chr18	5,062,096-5,064,054
	*A. carolinensis*	Nme2			ENSACAESTP00000008779	Scaffold_268	1,724,830-1,729,637
	*X. tropicalis*	Nme2	NME1	NP_001005140	ENSXETP00000024764	Scaffold_673	77,640-81,451
	*H. sapiens*	NMELV	NME1-NME2	NP_001018146	ENSP00000376894	Chr 17	49,230,997-49,249,103
	*P. troglodytes*	NmeLV	NME1-NME2	XP_511889	ENSPTRP00000044657	Chr 17	50,152,238-50,171,443
*Nme-LV*	*E. caballus*	NmeLV	NME1-NME2	XP_001499951	ENSECAP00000019175^†	Chr 11	26,692,478-26,707,469
	*B. taurus*	NmeLV	NDKB-BOVIN		ENSBTAP00000041066	Chr 19	36,625,292-36,645,867
	*O. anatinus*	NmeLV	NME1-NME2	XP_001515701		SuperContig18222	1057-8751
	*A. carolinensis*	NmeLV			ENSACAP00000002161	Scaffold_268	1,706,438-1,729,637
	*D. rerio*	Nme2a	NM23B; nme2l	NP_956264	ENSDARP00000064338	Chr 20	5,310,868-5,319,057
	*O. latipes*	Nme2a			ENSORLP00000018429	Chr 19	21,821,808-21,827,808
*Nme2a*	*G. aculeatus*	Nme2a			ENSGACP00000020117	Scaffold_48	706,609-708,477
	*T. nigroviridis*	Nme2a		CAF90396^†	ENSTNIP00000005730	Chr Un_random	34,843,841-34,848,064
	*T. rubripes*	Nme2a			ENSTRUP00000014520	Scaffold_29	678,695-680,960
	*D. rerio*	Nme2b1	nme2; nme1; ndpkz1; NM23B	NP_571001	ENSDARP00000074169^†	Scaffold Zv7_NA1913	1,772-2,772
*Nme2b*	*D. rerio*	Nme2b2	Ndpkz2	NP_571002		Scaffold Zv7_NA1913	8,750-9,346
	*O. latipes*	Nme2b	NDKA; GAAD; NME1-NME2		ENSORLP00000023099	Scaffold1014	323-3,121
	*T. rubripes*	Nme2b	NDKA; GAAD		ENSTRUP00000001870	Scaffold_307	158,498-160,002
	*H. sapiens*	NME3	NDPKC; DR-nm23; NM23-H3	NP_002504	ENSP00000219302	Chr 16	1,760,323-1,761,711
	*M. musculus*	Nme3	NDPKC; DR-nm23; Nm23-M3	NP_062704	ENSMUSP00000024978	Chr 17	25,033,459-25,034,448
	*G. gallus*	Nme3	NDPKC; DR-nm23	XP_414714	ENSGALP00000003531	Chr 14	13,989,877-13,991,647
	*A. carolinensis*	Nme3	NDPKC; NDK 3; DR-nm23		ENSACAP00000003455	Scaffold_1065	123,674-128,641
*Nme3*	*X. tropicalis*	Nme3	MGC89980	NP_001005115	ENSXETP00000022770	Scaffold_27	933,363-937,018
	*D. rerio*	Nme3	ndpkz3; NDPK-Z3	NP_571003	ENSDARP00000075112	Chr 3	13,184,712-13,194,308
	*O. latipes*	Nme3	NDK 3; NDPKC; DR-nm23		ENSORLP00000014699	Chr 8	15,106,871-15,109,573
	*G. aculeatus*	Nme3	NDK 3; NDPKC; DR-nm23		ENSGACP00000017241	GroupXI	12,674,486-12,677,154
	*T. rubripes*	Nme3	NDK 3; NDPKC; DR-nm23		ENSTRUP00000011464	Scaffold_294	107,469-108,977
	*T. nigroviridis*	Nme3	NDK 3; NDPKC; DR-nm23	CAG02649	ENSTNIP00000014528	Chr Un_random	6,812,965-6,814,848
	*H. sapiens*	NME4	NDPKD; NM23-H4	NP_005000	ENSP00000219479	Chr 16	387,193-390,754
	*M. musculus*	Nme4	NDPKD; Nm23-M4	NP_062705	ENSMUSP00000025007	Chr 17	26,228,682-26,232,433
	*G. gallus*	Nme4	NDPKD	AAB99857		Chr 14	13,763,108-13,764,673
	*A. carolinensis*	Nme4			ENSACAP00000016602	scaffold_1361	31,704-32,514
*Nme4*	*X. tropicalis*	Nme4		NP_001039239	ENSXETP00000022726	Scaffold_27	1,305,654-1,312,714
	*D. rerio*	Nme4	zgc:56482	NP_957489	ENSDARP00000060403	Chr 3	14,178,447-14,192,697
	*O. latipes*	Nme4	NDPKD		ENSORLP00000014089	Chr 8	14,902,635-14,905,718
	*G. aculeatus*	Nme4	NDPKD		ENSGACP00000016999	GroupXI	12,533,938-12,535,079
	*T. rubripes*	Nme4	NDPKD		ENSTRUP00000012573	Scaffold_112	81,060-82,895
	*T. nigroviridis*	Nme4	NDPKD	CAG12673	ENSTNIP00000022136	Chr Un_random	7,826,243-7,828,703

Protein names were retrieved from Genbank, Ensembl, iHOP and ZFIN. Location was obtained using Ensembl genome browser, or by UCSC Genome Bioinformatics BLAT when not available on Ensembl. *, sequence is an EST. †, incomplete sequence.

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ISSN: 2730-7182

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