Species delimitation in lemurs: multiple genetic loci reveal low levels of species diversity in the genus Cheirogaleus

Table 4 Data sets and nucleotide substitution models

Data set	Alignment length	# of sequences	# of haplotypes	# of variable/parsimony informative sites	Model ML	Model Bayesian
cytb + cox2	1824	88	62	494/442	GTR+I+Γ	GTR+I+Γ
adora3	370	96	29	26/17	GTR+I	GTR+I
fiba	604	96	49	44/34	K81uf+I+Γ	GTR+I+Γ
vWF	793	96	52	93/77	HKY+I+Γ	HKY+I+Γ

The data set, respective alignment length including outgroup, number of sequences in data set excluding outgroup, number of haplotypes excluding outgroup, and number of variable sites excluding outgroup, when gaps are considered missing data, except for the mtDNA data set are given. Nucleotide substitution models for each data set, as used in ML analyses and in Bayesian analyses, are listed.

ISSN: 2730-7182