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Table 7 The parameters of core promoter elements

From: A comparative analysis of divergently-paired genes (DPGs) among Drosophila and vertebrate genomes

Name

Consensusa

Length/Centerb

Windowc

Mismatch allowedd

TATA box

TATAWAAR

12/3

-33 - -23

1

Initiator

TCAKTY

12/3

-1 – +9

1

DPE

RGWYV

8/0

+27 – +36

0

MTE

CSARCSSAAC

10/0

+17 – +26

2

  1. a Motif consensus in NC-IUB nomenclature
  2. b The length of motifs (left) and the distance between the center and 5' end (right)
  3. c Applied windows for the center of motifs
  4. d The maximal number of allowed mismatches for motif consensus to remain functional