TY - CHAP AU - Coyne, J. A. AU - Orr, H. A. PY - 2004 DA - 2004// BT - Speciation PB - Sinauer Associates CY - Sunderland, MA ID - Coyne2004 ER - TY - JOUR AU - Orr, H. A. AU - Presgraves, D. PY - 2000 DA - 2000// TI - Speciation by postzygotic isolation: forces, genes and molecules JO - BioEssays VL - 22 UR - https://doi.org/3.0.CO;2-G DO - 3.0.CO;2-G ID - Orr2000 ER - TY - JOUR AU - Presgraves, D. C. PY - 2003 DA - 2003// TI - A Fine-Scale Genetic Analysis of Hybrid Incompatibilities in Drosophila JO - Genetics VL - 163 ID - Presgraves2003 ER - TY - JOUR AU - Orr, H. A. AU - Turelli, M. PY - 2001 DA - 2001// TI - The evolution of postzygotic isolation: accumulating Dobzhansky-Muller incompatibilities JO - Evolution VL - 55 UR - https://doi.org/10.1111/j.0014-3820.2001.tb00628.x DO - 10.1111/j.0014-3820.2001.tb00628.x ID - Orr2001 ER - TY - JOUR AU - Wu, C. -. I. PY - 2001 DA - 2001// TI - The genic view of the process of speciation JO - J Evol Biol VL - 14 UR - https://doi.org/10.1046/j.1420-9101.2001.00335.x DO - 10.1046/j.1420-9101.2001.00335.x ID - Wu2001 ER - TY - JOUR AU - Wilding, C. S. AU - Butlin, R. K. AU - Grahame, J. PY - 2001 DA - 2001// TI - Differential gene exchange between parapatric morphs of Littorina saxatilisdetected using AFLP markers JO - J Evol Biol VL - 14 UR - https://doi.org/10.1046/j.1420-9101.2001.00304.x DO - 10.1046/j.1420-9101.2001.00304.x ID - Wilding2001 ER - TY - JOUR AU - Nolte, A. W. AU - Freyhof, J. AU - Tautz, D. PY - 2006 DA - 2006// TI - When invaders meet locally adapted types: rapid moulding of hybrid zones between sculpins (Cottus, Pisces) in the Rhine system JO - Molecular Ecology VL - 15 UR - https://doi.org/10.1111/j.1365-294X.2006.02906.x DO - 10.1111/j.1365-294X.2006.02906.x ID - Nolte2006 ER - TY - JOUR AU - Dieckmann, U. AU - Doebeli, M. PY - 1999 DA - 1999// TI - On the origin of species by sympatric speciation JO - Nature VL - 400 UR - https://doi.org/10.1038/22521 DO - 10.1038/22521 ID - Dieckmann1999 ER - TY - BOOK AU - Dieckmann, U. AU - Doebeli, M. AU - Metz, J. A. J. AU - Tautz, D. PY - 2004 DA - 2004// TI - Adaptive speciation PB - Cambridge University Press. Cambridge CY - UK UR - https://doi.org/10.1017/CBO9781139342179 DO - 10.1017/CBO9781139342179 ID - Dieckmann2004 ER - TY - JOUR AU - King, M. C. AU - Wilson, A. C. PY - 1975 DA - 1975// TI - Evolution at two levels in humans and chimpanzees JO - Science VL - 188 UR - https://doi.org/10.1126/science.1090005 DO - 10.1126/science.1090005 ID - King1975 ER - TY - JOUR AU - Carroll, S. PY - 1995 DA - 1995// TI - Homeotic genes and the evolution of arthropods and chordates JO - Nature VL - 376 UR - https://doi.org/10.1038/376479a0 DO - 10.1038/376479a0 ID - Carroll1995 ER - TY - JOUR AU - Wray, G. A. AU - Hahn, M. W. AU - Abouheif, E. AU - Balhoff, J. P. AU - Pizer, M. AU - Rockman, M. V. AU - Romano, L. A. PY - 2003 DA - 2003// TI - The evolution of transcriptional regulation in eukaryotes JO - Mol Biol Evol VL - 20 UR - https://doi.org/10.1093/molbev/msg140 DO - 10.1093/molbev/msg140 ID - Wray2003 ER - TY - CHAP AU - Bernatchez, L. ED - Hendry, A. P. ED - Stearns, S. C. PY - 2004 DA - 2004// TI - Ecological theory of adaptive radiation: an empirical assessment from coregonine fishes (Salmoniformes) BT - Evolution illuminated: salmon and their relatives PB - Oxford Univ. Press CY - Oxford ID - Bernatchez2004 ER - TY - JOUR AU - Landry, L. AU - Vincent, W. F. AU - Bernatchez, L. PY - 2007 DA - 2007// TI - Parallelism between limnological features and phenotypic evolution of lake whitefish dwarf ecotypes JO - J Evol Biol VL - 20 UR - https://doi.org/10.1111/j.1420-9101.2007.01304.x DO - 10.1111/j.1420-9101.2007.01304.x ID - Landry2007 ER - TY - JOUR AU - Campell, D. AU - Bernatchez, L. PY - 2004 DA - 2004// TI - Genomic scan using AFLP markers as a means to assess the role of directional selection in the divergence of sympatric whitefish ecotypes JO - Mol Biol Evol VL - 21 UR - https://doi.org/10.1093/molbev/msh101 DO - 10.1093/molbev/msh101 ID - Campell2004 ER - TY - JOUR AU - Rogers, S. M. AU - Bernatchez, L. PY - 2007 DA - 2007// TI - The Genetic Architecture of Ecological Speciation and the Association with Signatures of Selection in Natural Lake Whitefish (Coregonussp. Salmonidae) Species Pairs JO - Mol Biol Evol VL - 24 UR - https://doi.org/10.1093/molbev/msm066 DO - 10.1093/molbev/msm066 ID - Rogers2007 ER - TY - JOUR AU - Rogers, S. M. AU - Bernatchez, L. PY - 2006 DA - 2006// TI - The genetic basis of intrinsic and extrinsic postzygotic isolation jointly promoting speciation in the lake whitefish species complex (Coregonus clupeaformis) JO - J Evol Biol VL - 19 UR - https://doi.org/10.1111/j.1420-9101.2006.01150.x DO - 10.1111/j.1420-9101.2006.01150.x ID - Rogers2006 ER - TY - JOUR AU - Rise, M. L. AU - von Schalburg, K. R. AU - Brown, G. D. AU - Mawer, M. A. AU - Devlin, R. H. AU - Kuipers, N. AU - Busby, M. AU - Beetz-Sargent, M. AU - Alberto, R. AU - Gibbs, A. R. AU - Hunt, P. AU - Shukin, R. AU - Zeznik, J. A. AU - Nelson, C. AU - Jones, S. M. R. AU - Smailus, D. E. AU - Jones, S. J. M. AU - Schein, J. E. AU - Marra, M. A. AU - Butterfield, Y. S. N. AU - Stott, J. M. AU - Ng, S. H. S. AU - Davidson, W. S. AU - Koop, B. F. PY - 2004 DA - 2004// TI - Development and Application of a Salmonid EST Database and cDNA Microarray: Data Mining and Interspecific Hybridization Characteristics JO - Genome Research VL - 14 UR - https://doi.org/10.1101/gr.1687304 DO - 10.1101/gr.1687304 ID - Rise2004 ER - TY - JOUR AU - von Schalburg, K. R. AU - Rise, M. L. AU - Cooper, G. A. AU - Brown, G. D. AU - Gibbs, A. R. AU - Nelson, C. C. AU - Davidson, W. S. AU - Koop, B. F. PY - 2005 DA - 2005// TI - Fish and chips: Various methodologies demonstrate utility of a 16,006-gene salmonid microarray JO - BMC Genomics VL - 6 UR - https://doi.org/10.1186/1471-2164-6-126 DO - 10.1186/1471-2164-6-126 ID - von Schalburg2005 ER - TY - JOUR AU - Derome, N. AU - Duchesne, P. AU - Bernatchez, L. PY - 2006 DA - 2006// TI - Parallelism in gene transcription among sympatric lake whitefish ecotypes (Coregonus clupeaformisMitchill) JO - Molecular Ecology VL - 15 UR - https://doi.org/10.1111/j.1365-294X.2005.02968.x DO - 10.1111/j.1365-294X.2005.02968.x ID - Derome2006 ER - TY - JOUR AU - Derome, N. AU - Bougas, B. AU - Rogers, S. M. AU - Whiteley, A. AU - Labbe, A. AU - Laroche, J. AU - Bernatchez, L. PY - 2008 DA - 2008// TI - Pervasive sex-linked effects on transcription regulation as revealed by eQTLmapping in lake whitefish species pairs (Coregonussp, Salmonidae) JO - Genetics VL - 179 UR - https://doi.org/10.1534/genetics.107.086306 DO - 10.1534/genetics.107.086306 ID - Derome2008 ER - TY - STD TI - St-Cyr J, Derome N, Bernatchez L: The transcriptomics of life-history trade-offs in whitefish species pairs (Coregonus sp.). Molecular Ecology. ID - ref22 ER - TY - BOOK AU - Haeckel, E. PY - 1866 DA - 1866// TI - Generelle Morphologie der Organismen. Bd. 2: Allgemeine Entwickelungsgeschichte der Organismen PB - Berlin CY - Georg Reimer UR - https://doi.org/10.1515/9783110848281 DO - 10.1515/9783110848281 ID - Haeckel1866 ER - TY - BOOK AU - von Baer, K. E. PY - 1828 DA - 1828// TI - Über Entwicklungsgeschichte der Thiere: Beobachtung und Reflexion PB - Bornträger CY - Königsberg ID - von Baer1828 ER - TY - BOOK AU - Zeldith, M. L. AU - Swiderski, D. L. AU - Sheets, H. D. AU - Fink, W. L. PY - 2003 DA - 2003// TI - Geometric Morphometrics for Biologists: A Primer PB - Academic Press CY - London ID - Zeldith2003 ER - TY - JOUR AU - Leek, J. T. AU - Storey, J. D. PY - 2007 DA - 2007// TI - Capturing heterogeneity in gene expression studies by "surrogate variable analysis." JO - PLoS Genetics VL - 3 UR - https://doi.org/10.1371/journal.pgen.0030161 DO - 10.1371/journal.pgen.0030161 ID - Leek2007 ER - TY - JOUR AU - Arbeitman, M. N. AU - Furlong, E. E. M. AU - Imam, F. AU - Johnson, E. AU - Null, B. H. AU - Baker, B. S. AU - Krasnow, M. A. AU - Scott, M. P. AU - Davis, R. W. AU - White, K. P. PY - 2002 DA - 2002// TI - Gene Expression During the Life Cycle of Drosophila melanogaster JO - Science VL - 297 UR - https://doi.org/10.1126/science.1072152 DO - 10.1126/science.1072152 ID - Arbeitman2002 ER - TY - JOUR AU - Pourquié, O. PY - 2003 DA - 2003// TI - The Segmentation Clock: Converting Embryonic Time into Spatial Pattern JO - Science VL - 301 UR - https://doi.org/10.1126/science.1085887 DO - 10.1126/science.1085887 ID - Pourquié2003 ER - TY - JOUR AU - Chouinard, A. AU - Bernatchez, L. PY - 1998 DA - 1998// TI - A study of trophic niche partitioning between larval populations of reproductively isolated whitefish (Coregonus sp.) ecotypes JO - Journal of Fish Biology VL - 53 ID - Chouinard1998 ER - TY - JOUR AU - Trudel, M. AU - Tremblay, A. AU - Schetagne, R. AU - Rasmussen, J. B. PY - 2001 DA - 2001// TI - Why are dwarf fish so small? An energetic analysis of polymorphism in lake whitefish (Coregonus clupeaformis) JO - Can J Fish Aquat Sci VL - 58 UR - https://doi.org/10.1139/f00-252 DO - 10.1139/f00-252 ID - Trudel2001 ER - TY - JOUR AU - Slack, J. M. W. AU - Holland, P. W. H. AU - Graham, C. F. PY - 1993 DA - 1993// TI - The zootype and the phylotypic stage JO - Nature VL - 362 UR - https://doi.org/10.1038/361490a0 DO - 10.1038/361490a0 ID - Slack1993 ER - TY - JOUR AU - Richardson, M. K. PY - 1999 DA - 1999// TI - Vertebrate evolution: the developmental origins of adult variation JO - BioEssays VL - 21 UR - https://doi.org/3.0.CO;2-U DO - 3.0.CO;2-U ID - Richardson1999 ER - TY - JOUR AU - True, J. R. AU - Haag, E. S. PY - 2001 DA - 2001// TI - Developmental system drift and flexibility in evolutionary trajectories JO - Evolution & Development VL - 3 UR - https://doi.org/10.1046/j.1525-142x.2001.003002109.x DO - 10.1046/j.1525-142x.2001.003002109.x ID - True2001 ER - TY - JOUR AU - Hall, B. K. PY - 1997 DA - 1997// TI - Phylotypic stage or phantom: is there a highly conserved embryonic stage in vertebrates? JO - Trends Ecol Evol VL - 12 UR - https://doi.org/10.1016/S0169-5347(97)01222-6 DO - 10.1016/S0169-5347(97)01222-6 ID - Hall1997 ER - TY - JOUR AU - Moehring, A. J. AU - Teeter, K. C. AU - Noor, M. A. F. PY - 2007 DA - 2007// TI - Genome-Wide Patterns of Expression in Drosophila Pure Species and Hybrid Males. II. Examination of Multiple-Species Hybridizations, Platforms, and Life Cycle Stages JO - Mol Biol Evol VL - 24 UR - https://doi.org/10.1093/molbev/msl142 DO - 10.1093/molbev/msl142 ID - Moehring2007 ER - TY - JOUR AU - Ortíz-Barrientos, D. AU - Counterman, B. A. AU - Noor, M. A. F. PY - 2007 DA - 2007// TI - Gene expression divergence and the origin of hybrid dysfunctions JO - Genetica VL - 129 UR - https://doi.org/10.1007/s10709-006-0034-1 DO - 10.1007/s10709-006-0034-1 ID - Ortíz-Barrientos2007 ER - TY - JOUR AU - Landry, C. R. AU - Hartl, D. L. AU - Ranz, J. M. PY - 2007 DA - 2007// TI - Genome clashes in hybrids: insights from gene expression JO - Heredity VL - 99 UR - https://doi.org/10.1038/sj.hdy.6801045 DO - 10.1038/sj.hdy.6801045 ID - Landry2007 ER - TY - JOUR AU - Lu, G. AU - Bernatchez, L. PY - 1998 DA - 1998// TI - Experimental evidence for reduced hybrid viability between dwarf and normal ecotypes of lake whitefish (Coregonus clupeaformisMitchill) JO - Proc R Soc Lond B Biol Sci VL - 265 UR - https://doi.org/10.1098/rspb.1998.0394 DO - 10.1098/rspb.1998.0394 ID - Lu1998 ER - TY - JOUR AU - Ortiz-Barrientos, D. AU - Reiland, J. AU - Hey, J. AU - Noor, M. A. F. PY - 2002 DA - 2002// TI - Recombination and the divergence of hybridizing species JO - Genetica VL - 116 UR - https://doi.org/10.1023/A:1021296829109 DO - 10.1023/A:1021296829109 ID - Ortiz-Barrientos2002 ER - TY - JOUR AU - Tautz, D. AU - Schmid, K. J. PY - 1998 DA - 1998// TI - From genes to individuals: developmental genes and the generation of the phenotype JO - Philos Trans R Soc Lond B Biol Sci VL - 353 UR - https://doi.org/10.1098/rstb.1998.0205 DO - 10.1098/rstb.1998.0205 ID - Tautz1998 ER - TY - JOUR AU - Rottscheidt, R. AU - Harr, B. PY - 2007 DA - 2007// TI - Extensive additivity of gene expression differentiates subspecies of the house mouse JO - Genetics VL - 177 UR - https://doi.org/10.1534/genetics.107.076190 DO - 10.1534/genetics.107.076190 ID - Rottscheidt2007 ER - TY - JOUR AU - Tautz, D. PY - 2000 DA - 2000// TI - A genetic uncertainty problem JO - Trends in Genetics VL - 16 UR - https://doi.org/10.1016/S0168-9525(00)02118-1 DO - 10.1016/S0168-9525(00)02118-1 ID - Tautz2000 ER - TY - JOUR AU - van der Sluijs, I. AU - van Dooren, T. J. M. AU - Seehausen, O. AU - van Alphen, J. J. M. PY - 2008 DA - 2008// TI - A test of fitness consequences of hybridization in sibling species of Lake Victoria cichlid fish JO - J Evol Biol VL - 21 UR - https://doi.org/10.1111/j.1420-9101.2007.01495.x DO - 10.1111/j.1420-9101.2007.01495.x ID - van der Sluijs2008 ER - TY - JOUR AU - Bolnick, D. I. AU - Near, T. J. PY - 2005 DA - 2005// TI - Tempo of hybrid inviability in centrarchid fishes (Teleostei: Centrachidae) JO - Evolution VL - 59 UR - https://doi.org/10.1111/j.0014-3820.2005.tb01824.x DO - 10.1111/j.0014-3820.2005.tb01824.x ID - Bolnick2005 ER - TY - JOUR AU - Price, T. D. AU - Bouvier, M. M. PY - 2002 DA - 2002// TI - The evolution of F1 postzygotic incompatibilities in birds JO - Evolution VL - 56 UR - https://doi.org/10.1111/j.0014-3820.2002.tb00133.x DO - 10.1111/j.0014-3820.2002.tb00133.x ID - Price2002 ER - TY - JOUR AU - Kimmel, C. B. AU - Ballard, W. W. AU - Kimmel, S. E. AU - Ullmann, B. AU - Schilling, T. F. PY - 1995 DA - 1995// TI - Stages of Embryonic Development of the Zebrafish JO - Developmental Dynamics VL - 203 UR - https://doi.org/10.1002/aja.1002030302 DO - 10.1002/aja.1002030302 ID - Kimmel1995 ER - TY - JOUR AU - Kerr, M. K. AU - Martin, M. AU - Churchill, G. A. PY - 2000 DA - 2000// TI - Analysis of variance for gene expression microarray data JO - Journal of Computational Biology VL - 7 UR - https://doi.org/10.1089/10665270050514954 DO - 10.1089/10665270050514954 ID - Kerr2000 ER - TY - JOUR AU - Kerr, M. K. AU - Afshari, C. A. AU - Bennett, L. AU - Bushel, P. AU - Martinez, J. AU - Walker, N. J. AU - Churchill, G. A. PY - 2002 DA - 2002// TI - Statistical analysis of a gene expression microarray experiment with replication JO - Statistica Sinica VL - 12 ID - Kerr2002 ER - TY - JOUR AU - Altschul, S. F. AU - Madden, T. L. AU - Schaffer, A. A. AU - Zhang, J. AU - Zhang, Z. AU - Miller, W. AU - Lipman, D. J. PY - 1997 DA - 1997// TI - Gapped BLAST and PSI-BLAST: a new generation of protein database search programs JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.17.3389 DO - 10.1093/nar/25.17.3389 ID - Altschul1997 ER - TY - JOUR AU - Hall, T. A. PY - 1999 DA - 1999// TI - BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT JO - Nucl Acids Symp Ser VL - 41 ID - Hall1999 ER - TY - JOUR AU - Hosack, D. A. AU - Dennis, G. AU - Sherman, B. T. AU - Lane, H. C. AU - Lempicki, R. A. PY - 2003 DA - 2003// TI - Identifying Biological Themes within Lists of Genes with EASE JO - Genome Biology VL - 4 UR - https://doi.org/10.1186/gb-2003-4-10-r70 DO - 10.1186/gb-2003-4-10-r70 ID - Hosack2003 ER -