From: Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades
 | Unpartitioned models | Partitioned DNA models | |||||
---|---|---|---|---|---|---|---|
Coding model /Node | All three codon positions | First two codon positions and third codon with RY coding | First two codon positions only | Protein sequences | A partition per gene (6 partitions) | A partition per codon position (3 partitions) | A partition per codon position per gene (18 partitions) |
Squirrel-related clade at the base of the rodent tree | 51 | 35 | 40 | 41 | 46 | 63 | 75 |
Mouse-related clade at the base of the rodent tree | 15 | 28 | less than 1 | less than 1 | 17 | 9 | 15 |
Ctenohystrica at the base of the rodent tree | 25 | 30 | 48 | 47 | 31 | 22 | 8 |
Monophyly of squirrel-related clade | 86 | 90 | 89 | 98 | 92 | 92 | 95 |
Monophyly of mouse related clade | 96 | 99 | 94 | 77 | 100 | 97 | 99 |
Monophyly of Ctenohystrica | 100 | 100 | 99 | 100 | 100 | 100 | 100 |
[Anomaluromorpha + Myodonta] monophyly | 55 | 54 | 65 | 37 | 50 | 72 | 48 |
Hystricidae at the base of the Hystricognathi | 92 | 91 | 89 | 89 | 95 | 91 | 91 |