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Table 1 Amphioxus GFP genes.

From: Amphioxus encodes the largest known family of green fluorescent proteins, which have diversified into distinct functional classes

Gene JGI Gene Model Baumann et al. 2008 Scaffold Position Correction of Gene Prediction Gene Product EST Count
Clade a
GFPa1 fgenesh2_pg.scaffold_1000062 Lan1 1 1116500–1118933 None EST/PCR 204
GFPa2 fgenesh2_pg.scaffold_264000004 Lan3 264 58192–60413 Trimmed N-term EST 27
GFPa3 fgenesh2_pg.scaffold_549000016 Lan9 549 352398–358639 None No  
GFPa4 fgenesh2_pg.scaffold_549000017   549 364853–368343 Trimmed C-term No  
GFPa5 fgenesh2_pg.scaffold_1000068 Lan12 1 1208185–1211151 Trimmed C-term No  
Clade b
GFPb1 fgenesh2_pg.scaffold_408000038 Lan13 408 704470–709647 Trimmed N-term No  
GFPb1a fgenesh2_pg.scaffold_58000035   58 532019–534945 Trimmed N-term (7AA + ATG) No  
GFPb2 fgenesh2_pg. scaffold_408000037   408 691033–694888 Extended N, C term No  
GFPb2a fgenesh2_pg. scaffold_58000034 Lan19 58 518572–521504 Trimmed start (48AA) No  
GFPb3 estExt_fgenesh2_pg.C_4080036 Lan5-Nterm 408 656826–660682 Extended N-term, trimmed C-term. EST 1
GFPb3a fgenesh2_pg.scaffold_58000032   58 485880–488855 Trimmmed N-term, added ATG No  
GFPb4 estExt_fgenesh2_pg.C_4080036 Lan5-Cterm 408 674499–680280 Trimmed N-term. EST 1
GFPb4a fgenesh2_pg.scaffold_58000033   58 507562–508283 Two-exon fragment. Trimmed and extended both ends No  
Clade c
GFPc1 fgenesh2_pg.scaffold_722000001 Lan11 722 186–3347 Trimmed N-term, added ATG No  
GFPc1a fgenesh2_pg.scaffold_58000036   58 555111–557942 None PCR  
Clade d
GFPd1 fgenesh2_pg.scaffold_149000048   150 209871–211956 Trimmed N-term EST/PCR 13
GFPd1a fgenesh2_pg.scaffold_150000025   149 908671–910787 None No  
GFPd2 fgenesh2_pg.scaffold_771000005   771 43072–45512 None EST/PCR 5
GFPd2a estExt_fgenesh2_pg.C_2370020 Lan7 237 340592–343047 Trimmed N-term No  
Clade e
GFPe1 fgenesh2_pg.scaffold_1000063   1 1141692–1143777 Filled internal deletion EST/PCR 194
GFPe2 fgenesh2_pg.scaffold_1000066 Lan4 1 1168253–1170596 None EST 26
GFPe2a fgenesh2_pg.scaffold_13000140   13 3112741–3113363 Extended N-term No  
GFPe3 fgenesh2_pg.scaffold_1000064 Lan2 1 1150911–1152721 None EST 125
GFPe3a fgenesh2_pg.scaffold_264000003   264 31164–32864 Extended C-term No  
Clade f
GFPf1 fgenesh2_pg.scaffold_1000065 Lan6 1 1159351–1162889 None EST 3
GFPf1a fgenesh2_pg.scaffold_264000002   264 14129–18055 Trimmed internal insert EST (truncated)  
  1. List of amphioxus GFP gene sequences with genomic mapping, errors in original gene predictions, evidence of gene product, and EST count. Secondary alleles have an "a" suffix. EST count refers to the number of GFP sequences in library of 334,502 B. floridae ESTs.