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Table 9 Stepwise context reduction for the nuclear SSU rRNA dataset using the extended likelihood-based approach.

From: Efficient context-dependent model building based on clustering posterior distributions for non-coding sequences

Model

Contexts

Annealing

Melting

log BF

GTR16C

16 (96)

[-21.25; -15.74]

[-19.29; -14.31]

-17.65

GTR15C

15 (90)

[-17.17; -13.45]

[-14.19; -10.30]

-13.78

GTR14C

14 (84)

[-14.05; -10.21]

[-10.09; -5.13]

-9.87

GTR13C

13 (78)

[-9.48; -6.19]

[-7.70; -3.72]

-6.77

GTR12C

12 (72)

[-6.99; -3.70]

[-3.84; -0.05]

-3.62

GTR11C

11 (66)

[-0.60; 2.92]

[2.97; 7.62]

3.23

GTR10C

10 (60)

[4.85; 8.77]

[6.62; 11.95]

8.05

GTR9C

9 (54)

[9.05; 12.46]

[8.55; 13.02]

10.77

GTR8C

8 (48)

[8.07; 11.26]

[8.68; 12.44]

10.11

GTR7C

7 (42)

[15.82; 19.60]

[15.09; 21.19]

17.93

GTR6C

6 (36)

[13.75; 16.89]

[21.71; 26.13]

19.62

GTR5C

5 (30)

[15.87; 18.89]

[17.86; 22.19]

18.70

GTR4C

4 (24)

[14.10; 17.69]

[14.30; 18.90]

16.25

GTR3C

3 (18)

[11.20; 14.99]

[15.22; 18.24]

14.91

GTR2C

2 (12)

[8.37; 11.57]

[13.14; 17.04]

12.53

GTR

1 (6)

-

-

0

  1. The stepwise context reduction using the extended likelihood-based clustering approach reveals the same optimal model with six clusters as the simple likelihood-based clustering approach for the nuclear SSU rRNA dataset.