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Table 1 Pedinophycean and trebouxiophycean taxa used in the chloroplast phylogenomic analyses

From: Chloroplast phylogenomic analysis resolves deep-level relationships within the green algal class Trebouxiophyceae

Taxa

Sourcea

Accession no.b

Sequencing methodc

Pedinophyceae

   

Pedinomonas minor

UTEX LB 1350

[GenBank:NC_016733]

 

Pedinomonas tuberculata

SAG 42.84

[GenBank:KM462867]*

454

Marsupiomonas sp.

NIES 1824

[GenBank:KM462870]*

454

Trebouxiophyceae

   

Chlorellales

   

Pseudochloris wilhelmii

SAG 1.80

[GenBank:KM462886]*

Illumina

Chlorella variabilis

NC64A

[GenBank:NC_015359]

 

Chlorella vulgaris

C-27

[GenBank:NC_001865]

 

Dicloster acuatus

SAG 41.98

[GenBank:KM462885]*

Sanger

Marvania geminata

SAG 12.88

[GenBank:KM462888]*

454

Parachlorella kessleri

SAG 211-11 g

[GenBank:NC_012978]

 

Choricystis/Botryococcus clade

   

Botryococcus braunii

SAG 807-1

[GenBank:KM462884]*

Illumina

Choricystis minor

SAG 17.98

[GenBank:KM462878]*

Sanger

Coccomyxa subellipsoidea

NIES 2166

[GenBank:NC_015084]

 

Elliptochloris bilobata

CAUP H7103

[GenBank:KM462887]*

454

Paradoxia multiseta

SAG 18.84

[GenBank:KM462879]*

Illumina

Trebouxiophyceae sp.

MX-AZ01

[GenBank:NC_018569]

 

Geminella clade

   

Geminella minor

SAG 22.88

[GenBank:KM462883]*

Illumina

Geminella terricola

SAG 20.91

[GenBank:KM462881]*

454

Gloeotilopsis sterilis

UTEX 1704

[GenBank:KM462877]*

Illumina

Microthamniales

   

Fusochloris perforata

SAG 28.85

[GenBank:KM462882]*

454

Microthamnion kuetzingianum

UTEX 318

[GenBank:KM462876]*

Sanger

Oocystis clade

   

Oocystis solitaria

SAG 83.80

[GenBank:FJ968739]

 

Planctonema lauterbornii

SAG 68.94

[GenBank:KM462880]*

Sanger

Prasiola clade

   

“Chlorella” mirabilis

SAG 38.88

[GenBank:KM462865]*

Sanger

Koliella longiseta

UTEX 339

[GenBank:KM462868]*

454

Pabia signiensis

SAG 7.90

[GenBank:KM462866]*

Sanger

Stichococcus bacillaris

UTEX 176

[GenBank:KM462864]*

Sanger

Prasiolopsis sp.

SAG 84.81

[GenBank:KM462862]*

454

Trebouxiales

   

Myrmecia israelensis

UTEX 1181

[GenBank:KM462861]*

454

Trebouxia aggregata

SAG 219-1D

[GenBank:EU123962-EU124002]

 

Watanabea clade

   

Dictyochloropsis reticulata

SAG 2150

[GenBank:KM462860]*

454

Watanabea reniformis

SAG 211-9b

[GenBank:KM462863]*

Illumina

Other lineages

   

Pleurastrosarcina brevispinosa d

UTEX 1176

[GenBank:KM462875]*

Illumina

“Koliella” corcontica

SAG 24.84

[GenBank:KM462874]*

Illumina

Leptosira terrestris

UTEX 333

[GenBank:NC_009681]

 

Lobosphaera incisa

SAG 2007

[GenBank:KM462871]*

Sanger

Neocystis brevis

CAUP D802

[GenBank:KM462873]*

454

Parietochloris pseudoalveolaris

UTEX 975

[GenBank:KM462869]*

Sanger

Xylochloris irregularis

CAUP H7801

[GenBank:KM462872]*

454

  1. aThe taxa originate from the culture collections of algae at the University of Goettingen (SAG, [43]), the University of Texas at Austin (UTEX, [44]), the Provasoli-Guillard National Center for Marine Algae and Microbiota (CCMP, [45]), the National Institute of Environmental Studies in Tsukuba (NIES, [46]), and Charles University in Prague (CAUP, [47]).
  2. bThe GenBank accession number of the chloroplast genome is given for each taxon. The asterisks denote the genomes that were sequenced during the course of this study.
  3. cSequencing methods are given only for the chloroplast genomes sequenced in this study.
  4. dThis taxon, originally classified in the genus Chlorosarcina, was assigned to the new genus Pleurastrosarcina by Sluiman and Blommers [48].
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BMC Ecology and Evolution

ISSN: 2730-7182

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