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Table 3 Arabidopsis microsatellite genetic variation

From: Taming the wild: resolving the gene pools of non-model Arabidopsislineages

Taxon Ploidy Mating system Individuals (populations) No. of alleles Mean no. of alleles per locus (SD)2 No. of unique alleles No. of rare alleles (5%)
A. arenicola Diploid SC 19 (14) 17 1.04 (0.10) - -
A. lyrata subsp. lyrata Diploid SI/SC1 57 (29) 38 1.18 (0.16) - -
A. petraea susbp. umbrosa Diploid Unknown 25 (16) 29 1.20 (0.26) - 2
A. petraea subsp. septentrionalis Tetraploid Unknown 8 (8) 36 1.63 (0.31) 2 2
A. lyrata subsp. petraea Diploid SI 187 (13) 89 1.46 (0.19) 10 13
A. lyrata subsp. petraea Tetraploid SI 25 (5) 57 1.93 (0.37) - -
A. arenosa subsp. arenosa Tetraploid SI 76 (13) 94 2.31 (0.33) 2 5
A. arenosa subsp. arenosa var. intermedia Tetraploid SI 14 (4) 44 2.19 (0.27) - -
A. arenosa subsp. borbasii Tetraploid SI 160 (22) 111 2.30 (0.33) 7 9
A. carpatica Diploid SI 113 (9) 104 1.59 (0.19) 6 10
A. petrogena subsp. petrogena Diploid SI 73 (7) 73 1.53 (0.20) - 3
A. petrogena subsp. exoleta Tetraploid SI 56 (11) 83 2.22 (0.36) 1 5
A. neglecta subsp. neglecta Diploid SI 35 (5) 51 1.51 (0.21) 1 3
A. neglecta subsp. robusta Tetraploid SI 8 (1) 39 2.24 (0.23) - 2
A. nitida Diploid SI 22 (4) 59 1.54 (0.22) 3 3
A. croatica Diploid SI 15 (3) 26 1.33 (0.19) 1 1
A. halleri subsp. dacica Diploid SI 3 (3) 15 1.53 (0.31) - -
A. halleri subsp. halleri Diploid SI 199 (19) 59 1.37 (0.19) 6 7
A. halleri subsp. ovirensis Diploid SI 24 (4) 18 1.31 (0.16) 1 1
A. halleri subsp. tatrica Diploid SI 25 (7) 40 1.37 (0.14) - 1
A. halleri subsp. gemmifera Diploid SI 8 (5) 15 1.10 (0.15) - -
A. cebennensis Diploid SI 153 (11) 23 1.17 (0.14) - -
A. pedemontana Diploid SI 40 (9) 22 1.31 (0.18) - 1
  1. Summary table of analyzed individuals and populations of the various Arabidopsis taxa for microsatellite variation. Information on ploidy level, mating system variation (own data and literature survey) and some summary statistics are provided. SC: self-compatible, SI: self-incompatible.
  2. 1SC populations of North American A. lyrata subsp. lyrata are not considered here.
  3. 2Respectively two loci in tetraploids.