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Table 4 Gene diversity statistics of microsatellites, ITS and cpDNA variation

From: Taming the wild: resolving the gene pools of non-model Arabidopsislineages

   Microsatellites ITS haplotypes trnLF haplotypes
  Ploidy Individuals analyzed Nei’s gene diversity (SD) Individuals analyzed Nucleotide diversity (πx10-2) (SD) Nei’s gene diversity (SD) Individuals analyzed Nucleotide diversity (πx10-2) (SD) Nei’s gene diversity (SD)
A. lyrata group   288 (85) 0.562 (0.312) 126 (92) 0.248 (0.168) 0.797 (0.025) 176 (101) 0.224 (0.150) 0.751 (0.024)
A. arenicola 19 (14) 0.205 (0.156) 17 (16) 0.139 (0.117) 0.323 (0.135) 17 (15) 0.035 (0.047) 0.117 (0.101)
A. lyrata subsp. lyrata 57 (29) 0.378 (0.225) 37 (21) 0.014 (0.030) 0.516 (0.085) 54 (26) 0.058 (0.061) 0.380 (0.065)
A. petraea subsp. umbrosa 25 (16) 0.468 (0.272) 30 (18) 0.154 (0.118) 0.675 (0.061) 28 (18) 0.362 (0.225) 0.738 (0.053)
A. petraea subsp. septentrionalis 8 (8) not calculated 10 (10) 0.030 (0.046) 0.200 (0.154) 9 (9) 0.323 (0.223) 0.694 (0.147)
A. lyrata subsp. petraea 187 (13) 0.556 (0.309) 31 (26) 0.025 (0.039) 0.898 (0.030) 61 (29) 0.229 (0.154) 0.766 (0.042)
A. lyrata subsp. petraea 25 (5) not calculated 1 (1) 0.000 1.000 (0.000) 7 (4) 0.241 (0.185) 0.714 (0.180)
A. arenosa group   258 (79) 0.560 (0.311) 247 (181) 0.138 (0.107) 0.803 (0.024) 568 (263) 0.171 (0.123) 0.585 (0.023)
A. arenosa subsp. arenosa 76 (13) not calculated 23 (23) 0.129 (0.106) 0.806 (0.061) 32 (28) 0.163 (0.122) 0.485 (0.107)
A. arenosa var. intermedia 14 (4) not calculated 4 (3) 0.000 1.000 (0.176) 6 (5) 0.149 (0.133) 0.333 (0.215)
A. arenosa subsp. borbasii 160 (22) not calculated 173 (120) 0.065 (0.066) 0.748 (0.033) 391 (167) 0.142 (0.107) 0.503 (0.029)
A. carpatica 113 (9) 0.554 (0.309) 8 (6) 0.065 (0.075) 0.750 (0.139) 51 (14) 0.282 (0.181) 0.752 (0.046)
A. petrogena 73 (7) 0.512 (0.289) 5 (4) 0.399 (0.298) 1.000 (0.298) 37 (20) 0.052 (0.058) 0.348 (0.077)
A. petrogena subsp. exoleta 56 (11) not calculated 8 (6) 0.345 (0.241) 0.928 (0.084) 8 (6) 0.341 (0.238) 0.892 (0.085)
A. neglecta subsp. neglecta 35 (5) 0.451 (0.262) 8 (5) 0.323 (0.229) 0.928 (0.084) 16 (5) 0.111 (0.097) 0.450 (0.150)
A. neglecta subsp. robusta 8 (1) not calculated 6 (3) 0.000 0.600 (0.215) 6 (3) 0.099 (0.101) 0.333 (0.215)
A. nitida 22 (4) 0.635 (0.354) 4 (4) 0.384 (0.309) 1.000 (0.176) 11 (6) 0.282 (0.196) 0.709 (0.099)
A. croatica 15 (3) 0.374 (0.228) 8 (7) 0.384 (0.263) 1.000 (0.062) 10 (9) 0.159 (0.129) 0.533 (0.094)
A. halleri group   259 (38) 0.427 (0.254) 103 (90) 0.159 (0.118) 0.901 (0.020) 94 (83) 0.268 (0.173) 0.712 (0.030)
A. halleri subsp. dacica 3 (3) 0.533 (0.380) 8 (7) 0.049 (0.063) 0.928 (0.084) 8 (7) 0.213 (0.165) 0.464 (0.200)
A. halleri subsp. halleri 199 (19) 0.392 (0.237) 67 (61) 0.036 (0.047) 0.858 (0.029) 62 (58) 0.236 (0.158) 0.670 (0.049)
A. halleri subsp. ovirensis 24 (4) 0.330 (0.204) 5 (4) 0.122 (0.122) 0.900 (0.161) 2 (1) 0.000 0.000
A. halleri subsp. tatrica 25 (7) 0.408 (0.242) 13 (10) 0.023 (0.039) 0.730 (0.096) 12 (10) 0.364 (0.238) 0.727 (0.113)
A. halleri subsp. gemmifera 8 (5) 0.301 (0.205) 9 (7) 0.570 (0.363) 0.916 (0.092) 9 (6) 0.000 0.000
A. umezawana ? 0 not calculated 1 (1) 0.000 1.000 (0.000) 1 (1) 0.000 1.000 (0.000)
A. cebennensis 153 (11) 0.189 (0.130) 8 (6) 0.185 (0.150) 0.785 (0.150) 148 (12) 0.174 (0.125) 0.702 (0.018)
A. pedemontana 40 (9) 0.259 (0.167) 2 (2) 0.312 (0.382) 1.000 (0.500) 9 (2) 0.000 0.000
  1. Nei’s Gene and nucleotide diversity [89] of microsatellite, ITS and cpDNA genetic variation among the various taxa. The number of individuals analyzed is indicated with respective number of populations in brackets. Standard deviation of mean genetic diversity is given in brackets.
  2. Gene diversity statistics for microsatellite variation among tetraploid populations was not calculated, but respective data are analyzed and displayed with hierarchical Structure analysis (see Figure 5).