Table 4 Gene diversity statistics of microsatellites, ITS and cpDNA variation
From: Taming the wild: resolving the gene pools of non-model Arabidopsislineages
Microsatellites | ITS haplotypes | trnLF haplotypes | |||||||
|---|---|---|---|---|---|---|---|---|---|
Ploidy | Individuals analyzed | Nei’s gene diversity (SD) | Individuals analyzed | Nucleotide diversity (πx10-2) (SD) | Nei’s gene diversity (SD) | Individuals analyzed | Nucleotide diversity (πx10-2) (SD) | Nei’s gene diversity (SD) | |
A. lyrata group | 288 (85) | 0.562 (0.312) | 126 (92) | 0.248 (0.168) | 0.797 (0.025) | 176 (101) | 0.224 (0.150) | 0.751 (0.024) | |
A. arenicola | 2× | 19 (14) | 0.205 (0.156) | 17 (16) | 0.139 (0.117) | 0.323 (0.135) | 17 (15) | 0.035 (0.047) | 0.117 (0.101) |
A. lyrata subsp. lyrata | 2× | 57 (29) | 0.378 (0.225) | 37 (21) | 0.014 (0.030) | 0.516 (0.085) | 54 (26) | 0.058 (0.061) | 0.380 (0.065) |
A. petraea subsp. umbrosa | 2× | 25 (16) | 0.468 (0.272) | 30 (18) | 0.154 (0.118) | 0.675 (0.061) | 28 (18) | 0.362 (0.225) | 0.738 (0.053) |
A. petraea subsp. septentrionalis | 4× | 8 (8) | not calculated | 10 (10) | 0.030 (0.046) | 0.200 (0.154) | 9 (9) | 0.323 (0.223) | 0.694 (0.147) |
A. lyrata subsp. petraea | 2× | 187 (13) | 0.556 (0.309) | 31 (26) | 0.025 (0.039) | 0.898 (0.030) | 61 (29) | 0.229 (0.154) | 0.766 (0.042) |
A. lyrata subsp. petraea | 4× | 25 (5) | not calculated | 1 (1) | 0.000 | 1.000 (0.000) | 7 (4) | 0.241 (0.185) | 0.714 (0.180) |
A. arenosa group | 258 (79) | 0.560 (0.311) | 247 (181) | 0.138 (0.107) | 0.803 (0.024) | 568 (263) | 0.171 (0.123) | 0.585 (0.023) | |
A. arenosa subsp. arenosa | 4× | 76 (13) | not calculated | 23 (23) | 0.129 (0.106) | 0.806 (0.061) | 32 (28) | 0.163 (0.122) | 0.485 (0.107) |
A. arenosa var. intermedia | 4× | 14 (4) | not calculated | 4 (3) | 0.000 | 1.000 (0.176) | 6 (5) | 0.149 (0.133) | 0.333 (0.215) |
A. arenosa subsp. borbasii | 4× | 160 (22) | not calculated | 173 (120) | 0.065 (0.066) | 0.748 (0.033) | 391 (167) | 0.142 (0.107) | 0.503 (0.029) |
A. carpatica | 2× | 113 (9) | 0.554 (0.309) | 8 (6) | 0.065 (0.075) | 0.750 (0.139) | 51 (14) | 0.282 (0.181) | 0.752 (0.046) |
A. petrogena | 2× | 73 (7) | 0.512 (0.289) | 5 (4) | 0.399 (0.298) | 1.000 (0.298) | 37 (20) | 0.052 (0.058) | 0.348 (0.077) |
A. petrogena subsp. exoleta | 4× | 56 (11) | not calculated | 8 (6) | 0.345 (0.241) | 0.928 (0.084) | 8 (6) | 0.341 (0.238) | 0.892 (0.085) |
A. neglecta subsp. neglecta | 2× | 35 (5) | 0.451 (0.262) | 8 (5) | 0.323 (0.229) | 0.928 (0.084) | 16 (5) | 0.111 (0.097) | 0.450 (0.150) |
A. neglecta subsp. robusta | 4× | 8 (1) | not calculated | 6 (3) | 0.000 | 0.600 (0.215) | 6 (3) | 0.099 (0.101) | 0.333 (0.215) |
A. nitida | 2× | 22 (4) | 0.635 (0.354) | 4 (4) | 0.384 (0.309) | 1.000 (0.176) | 11 (6) | 0.282 (0.196) | 0.709 (0.099) |
A. croatica | 2× | 15 (3) | 0.374 (0.228) | 8 (7) | 0.384 (0.263) | 1.000 (0.062) | 10 (9) | 0.159 (0.129) | 0.533 (0.094) |
A. halleri group | 259 (38) | 0.427 (0.254) | 103 (90) | 0.159 (0.118) | 0.901 (0.020) | 94 (83) | 0.268 (0.173) | 0.712 (0.030) | |
A. halleri subsp. dacica | 2× | 3 (3) | 0.533 (0.380) | 8 (7) | 0.049 (0.063) | 0.928 (0.084) | 8 (7) | 0.213 (0.165) | 0.464 (0.200) |
A. halleri subsp. halleri | 2× | 199 (19) | 0.392 (0.237) | 67 (61) | 0.036 (0.047) | 0.858 (0.029) | 62 (58) | 0.236 (0.158) | 0.670 (0.049) |
A. halleri subsp. ovirensis | 2× | 24 (4) | 0.330 (0.204) | 5 (4) | 0.122 (0.122) | 0.900 (0.161) | 2 (1) | 0.000 | 0.000 |
A. halleri subsp. tatrica | 2× | 25 (7) | 0.408 (0.242) | 13 (10) | 0.023 (0.039) | 0.730 (0.096) | 12 (10) | 0.364 (0.238) | 0.727 (0.113) |
A. halleri subsp. gemmifera | 2× | 8 (5) | 0.301 (0.205) | 9 (7) | 0.570 (0.363) | 0.916 (0.092) | 9 (6) | 0.000 | 0.000 |
A. umezawana | ? | 0 | not calculated | 1 (1) | 0.000 | 1.000 (0.000) | 1 (1) | 0.000 | 1.000 (0.000) |
A. cebennensis | 2× | 153 (11) | 0.189 (0.130) | 8 (6) | 0.185 (0.150) | 0.785 (0.150) | 148 (12) | 0.174 (0.125) | 0.702 (0.018) |
A. pedemontana | 2× | 40 (9) | 0.259 (0.167) | 2 (2) | 0.312 (0.382) | 1.000 (0.500) | 9 (2) | 0.000 | 0.000 |