Figure 1

Cytonuclear incongruence. Majority-rule consensus tree with all compatible groups for mitochondrial (on the left) and nuclear (on the right) datasets. Red dots indicates nodes having Bayesian posterior probabilities lower than 0.95. Links are drawn to highlight the topological differences. Colours correspond to species clades (see Table 1) as follows: black: outgroups, turquoise: percula, grey: Amphiprion latezonatus and A. chrysopterus (monospecific lineages), orange: clarkii, blue: akallopisos, rose: Australian, green: ephippium, yellow: polymnus, brown: Indian. A coloured legend, which repeats this information for the major clades, is located at the right of the figure.