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Table 4 Polymorphic sites for the mtDNA D-loop haplotypes in ancient Chinese donkeys

From: Ancient DNA provides new insight into the maternal lineages and domestication of Chinese donkeys

Haplotypes

Nucleotide positions

Samples

Lineage

 

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

  
 

5

5

5

5

5

5

5

5

5

5

5

5

5

5

5

5

5

5

5

5

5

5

5

5

5

5

5

5

  
 

4

4

5

5

5

5

5

5

6

6

6

6

6

6

6

6

7

7

7

8

8

8

8

8

8

9

9

9

  
 

8

9

0

3

6

8

9

9

4

4

4

5

5

6

9

9

0

6

7

0

0

2

2

2

6

5

9

9

  
 

4

0

3

1

9

0

8

9

4

5

9

2

3

2

5

8

1

4

0

1

6

0

1

2

3

1

0

1

  

X97337

G

C

T

C

A

A

C

A

G

A

C

C

A

A

C

C

A

C

T

C

C

C

G

G

T

G

G

T

  

H1

.

.

.

.

.

.

.

G

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

-

.

A

.

L2,L3,L4

Nubian

H2

.

.

.

.

.

G

.

G

.

.

.

.

.

.

.

.

G

.

.

.

.

.

.

.

-

.

A

.

L17

Nubian

H3

.

.

.

.

.

.

.

G

.

.

.

.

.

.

.

.

.

.

.

.

.

.

A

.

-

.

A

.

L9,L20

Nubian

H4

.

.

.

.

.

.

.

G

A

.

T

.

C

.

T

.

.

T

.

.

.

.

.

.

-

.

A

.

L12

Nubian

H5

.

.

.

.

.

.

.

G

A

.

.

.

.

.

T

.

.

.

.

.

.

.

.

.

-

.

A

.

L13,L21

Nubian

H6

.

.

.

.

G

.

.

G

.

.

.

.

.

.

T

.

.

.

.

.

.

.

.

.

-

.

A

.

L6

Nubian

H7

A

T

C

.

G

G

T

G

A

.

.

T

.

G

.

T

.

.

C

T

T

T

A

A

-

A

A

C

L1,L5,L14,L19

Somali

H8

A

T

C

T

G

G

T

G

A

.

.

T

.

G

.

T

.

.

C

T

T

T

A

A

-

A

A

C

L15

Somali

H9

A

T

C

.

G

G

T

G

A

G

.

T

.

G

.

T

.

.

C

T

T

T

A

A

-

A

A

C

L16

Somali

H10

A

T

C

.

G

G

T

G

A

G

.

T

.

G

.

T

.

.

C

T

.

T

A

A

-

A

A

C

L18

Somali

  1. X97337 indicates the nucleotides for 15484-15991, according to the GenBank accession number X97337.