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Table 2 Distribution of por genes and chloroplast-encoded LIPOR genes in rhodophytes and CASH algae

From: Extensive horizontal gene transfer, duplication, and loss of chlorophyll synthesis genes in the algae

   

Por genes in genus (this paper)

Chloroplast-encoded LIPOR genes

Chloroplast genome accession

Taxon

Species

Culture ID

chlL

chlN

chlB

Rhodophyta

       

Bangiophyceae

Cyanidioschyzon merolae

Strain 10D

3

-

-

-

NC_004799

Bangiophyceae

Cyanidium caldarium

RK1

 

-

-Δ

-

NC_001840

Bangiophyceae

Porphyra purpurea

Avonport

1

+

+

+

NC_000925

Bangiophyceae

Pyropia haitanensis

PH-38 (voucher)

1

+

+

+

NC_021189

Bangiophyceae

Pyropia yezoensis

U-51

1

+

+

+

NC_007932

Florideophyceae

Calliarthron tuberculosum

 

1

+

+

+

NC_021075

Florideophyceae

Chondrus crispus

 

1

-

-

-

NC_020795

Florideophyceae

Gracilaria tenuistipitata var. liui

 

1

-

-

-

NC_006137

Florideophyceae

Gracilaria salicornia

ARS08332 (voucher)

1

-

-

-

KF861575

Halymeniaceae

Grateloupia taiwanensis

  

-

-

-

NC_021618

Porphyridiophyceae

Porphyridium purpureum

NIES 2140

1

-

-

-

AP012987

Cryptophyta

       

Chroomonadaceae

Chroomonas mesostigmatica

CCMP1168

2

+

ψ

?

EU233753; EU233756

Chroomonadaceae

Chroomonas pauciplastida

CCMP268

2

+

+

+

EU233754; EU233755; EU233748

Chroomonadaceae

Hemiselmis andersenii

CCMP644

2

+

+

+

EU233749; EU233750; EU233747

Chroomonadaceae

Hemiselmis tepida

CCMP443

2

+

+

?

EU233751; EU233752

Geminigeraceae

Guillardia theta

 

1

-

-

-

NC_000926

Pyrenomonadaceae

Rhodomonas salina

CCMP1319

1–2

ψ

ψ

ψ

NC_009573

Haptophyta

       

Isochrysidales

Emiliania huxleyi

CCMP373

1

-

-

-

NC_007288

Pavlovales

Pavlova lutheri

ATCC 50092

1–2

-

-

-

NC_020371

Phaeocystales

Phaeocystis antarctica

CCMP1374

2–3

-

-

-

NC_016703

Phaeocystales

Phaeocystis globosa

Pg-G(A)

2–3

-

-

-

NC_021637

Prymnesiales

Chrysochromulina tobin

CCMP291

2

-

-

-

KJ201907

Stramenopila

       

Bacillariophyceae

Fistulifera sp.

JPCC DA0580

 

-

-

-

NC_015403

Bacillariophyceae

Odontella sinensis

 

2

-

-

-

NC_001713

Bacillariophyceae

Phaeodactylum tricornutum

CCAP1055/1

2

-

-

-

NC_008588

Bacillariophyceae

Synedra acus

  

-

-

-

NC_016731

Bacillariophyceae

Thalassiosira oceanica

CCMP 1005

2

-

-

-

NC_014808

Bacillariophyceae

Thalassiosira pseudonana

CCMP 1335

2

-

-

-

NC_008589

Dictyochophyceae

Apedinella radians

CCMP1767

 

-

-

-

unpublished data*

Dictyochophyceae

Rhizochromulina marina

CCAP950/1

1

+

+

+

unpublished data*

Eustimatophyceae

Nannochloropsis gaditana

CCMP526

1

+

+

+

KJ410682

Eustimatophyceae

Nannochloropsis oceanica

LAMB0001

1

+

+

+

KJ410683

Eustimatophyceae

Nannochloropsis oculata

CCMP525

1

+

+

+

KJ410684

Eustimatophyceae

Nannochloropsis salina

CCMP1776

1

+

+

+

KJ410685

Pelagophyceae

Aureococcus anophagefferens

CCMP1984

2

-

-

-

NC_012898

Pelagophyceae

Aureoumbra lagunensis

CCMP1507

1

+

+

+

NC_012903

Pelagophyceae

Pelagomonas calceolata

CCMP1756

2

-

-

-

unpublished data*

Phaeophyceae

Desmarestia aculeata

KU-1141

 

+

+

?

unpublished data*

Phaeophyceae

Ectocarpus siliculosus

Ec32 (CCAP1310/4)

1

+

+

+

NC_013498

Phaeophyceae

Fucus vesiculosus

  

+

+

+

NC_016735

Phaeophyceae

Nereocystis lutkeana

UWCC MA 708

 

+

+

+

unpublished data*

Phaeophyceae

Saccharina japonica

  

+

+

+

NC_018523

Pinguiophyceae

Pinguiococcus pyrenoidosus

CCMP2188

1

+

+

+

unpublished data*

Raphidophyceae

Chattonella subsalsa

CCMP217

1

+

+

+

unpublished data*

Raphidophyceae

Heterosigma akashiwo

CCMP452

2

-

-

-

EU168191

Raphidophyceae

Heterosigma akashiwo

NIES293

2

-

-

-

NC_010772

Synurophyceae

Synura petersenii

CCMP854

 

-

-

-

unpublished data*

Xanthophyceae

Botrydium cytosum

UTEX 157

 

+

+

+

unpublished data*

Xanthophyceae

Tribonema aequale

CCMP1275

1

+

+

+

unpublished data*

Xanthophyceae

Vaucheria litorea

CCMP2940

1

+

+

+

NC_011600

Dinophyta

       

Dinotrichales (dinotom)

Durinskia baltica

CS-38

 

-

-

-

NC_014287

Dinotrichales (dinotom)

Kryptoperidinium foliaceum

CCMP1326

 

-

-

-

NC_014267

Chromerida

       

Chromeraceae

Chromera velia

CCMP2878

 

-

-

-

NC_014340

Vitrellaceae

Vitrella brassicaformis

CCMP3155/RM11

 

+, 2

+, 2

+

NC_014345

  1. (+) Present in chloroplast genome or Fong and Archibald [46] study; (-) not present in fully-sequenced chloroplast genome; (ψ) present as pseudogene; (?) unknown; (*) Cattolico, Rocap and McKay; (Δ) C. caldarium re-annotated as per [6]. The number of por genes found in this study for a particular genus (not necessarily the same species or strain) is also indicated.