Eurasian house mouse (Mus musculus L.) differentiation at microsatellite loci identifies the Iranian plateau as a phylogeographic hotspot

Hardouin, Emilie A; Orth, Annie; Teschke, Meike; Darvish, Jamshid; Tautz, Diethard; Bonhomme, François

doi:10.1186/s12862-015-0306-4

Table 1 Geographic origin of samples and their genetic diversity parameters at 19 microsatellite loci

From: Eurasian house mouse (Mus musculus L.) differentiation at microsatellite loci identifies the Iranian plateau as a phylogeographic hotspot

Region	Countries	Populations	sub-species	Latitude N	Longitude E	N	Hexp	Hobs	Average number of allele	References
Africa	Kenya	Mombasa	castaneus	−3.93	39.75	8	0.72	0.52	6.58	[12]
	Kenya	Nairobi	castaneus	−1.28	36.75	23	0.80	0.55	10.84	[12]*
	Madagascar	Malagasy	castaneus	−19.54	47.51	31	0.67	0.48	9.74	[15]*
	Morocco	Azemmour	domesticus	33.41	−8.03	19	0.74	0.66	7.37	[16]*
	Morocco	Tanant	domesticus	31.80	−6.95	32	0.65	0.48	8.05	[16]
	Senegal	Dakar	domesticus	16.46	−15.69	10	0.68	0.52	5.11	[17]
	Spain	La Palma	domesticus	28.68	−17.85	30	0.75	0.67	9.68	[17]
	Tunisia	Kairouan	domesticus	35.67	10.10	12	0.82	0.60	10.53	[17]
	Tunisia	Tunisia Central-East	domesticus	35.66	10.73	40	0.83	0.50	13.68	[17]*
Asia	Armenia	Megri	musculus	39.90	46.24	10	0.75	0.67	7.16	[18]*
	Kazakhstan	Kazakhstan	musculus	43.00	77.00	46	0.74	0.63	13.32	[19]
	China	Ningxia	musculus	34.98	105.93	22	0.75	0.66	11.37	this study
	China	Xinjiang	musculus	43.47	84.89	6	0.69	0.64	5.47	this study
	Georgia	Abkhazia	musculus	43.12	41.27	5	0.69	0.68	5.11	[18]
		Adjaria	domesticus	41.58	41.66	3	0.64	0.75	3.95	[18]*
		East Georgia	musculus	41.70	45.22	32	0.80	0.70	15.26	[18]*
	India	India North	castaneus	28.10	77.27	30	0.84	0.63	15.37	[20]
	India	Nilgiri	castaneus	11.57	76.64	7	0.66	0.46	5.42	[20]*
	Iran	Ahvaz	domesticus	31.53	48.53	45	0.89	0.83	19.79	[21]
		Bandar-Abbas	“Central Iran”	27.86	56.30	34	0.81	0.61	13.21	[21]
		Birdjand-Zabol	“South East Iran”	31.54	61.14	14	0.81	0.61	10.37	[21]*
		Chabahar	“South East Iran”	25.60	60.79	53	0.77	0.55	12.26	[21]
		Hamedan	domesticus	35.05	48.88	29	0.76	0.71	9.37	[21]
		Iranshahr	“South East Iran”	27.36	60.25	29	0.77	0.48	9.42	[21]
		Iran North East	musculus	36.88	59.01	10	0.75	0.64	8.68	[12]
		Khakh-Qaene	musculus	33.95	58.84	21	0.81	0.64	13.47	[12]*
		Isfahan	“Central Iran”	32.77	51.58	30	0.76	0.68	9.95	[21]
		Tehran	“Central Iran”	35.70	51.42	5	0.67	0.74	4.53	[12]*
		Yazd	“Central Iran”	31.74	54.20	21	0.66	0.51	6.74	[12]
	Pakistan	Pakistan	castaneus	33.46	72.95	22	0.86	0.71	15.11	[20]*
	Thailand	Thailand	castaneus	13.95	100.57	12	0.82	0.54	10.42	[22]
	Turkmenistan	Turkmenistan	musculus	35.89	61.65	3	0.63	0.69	3.89	this study
Europe	Bulgaria	Bulgaria	domesticus	42.74	27.57	14	0.79	0.65	9.16	[21]
	Cyprus	Cyprus	domesticus	34.79	32.81	28	0.77	0.59	9.74	[23]*
	Czech Republic	Czech Republic	musculus	49.16	16.20	43	0.72	0.52	10.00	[24,25]
	France	Massif-Central	domesticus	44.38	3.00	44	0.76	0.60	11.42	[19]
	Germany	Koeln-Bonn	domesticus	50.88	6.88	36	0.79	0.54	11.21	[19]
	Italy	North Italy	domesticus	45.38	9.38	4	0.69	0.66	4.68	[21]*
	Russia	Moscow	musculus	55.76	37.62	5	0.51	0.58	3.26	[18]
	Spain	Spain	domesticus	42.08	−1.65	13	0.72	0.49	7.05	[17]
Middle East	Israel	Israel	domesticus	32.97	35.71	11	0.79	0.75	7.95	[17]*
	Lebanon	Amchit	domesticus	35.73	34.15	13	0.81	0.76	8.95	[17]
		Jbeil	domesticus	34.13	35.72	14	0.79	0.70	8.05	[17]
		Rayak	domesticus	33.87	36.03	23	0.79	0.72	8.95	[17]
		Terbol	domesticus	33.82	35.98	14	0.67	0.58	5.74	[17]
	Syria	Latakia	domesticus	35.52	35.79	4	0.61	0.58	3.42	[17]
	Turkey	Turkey East	domesticus	38.63	42.90	3	0.66	0.80	3.68	this study

N = number of individuals analysed, Hexp = expected heterozygosity, Hobs = observed heterozygosity, *samples kept as wild-derived inbred strains at the CGSS repository of Montpellier http://www.isem.univ-montp2.fr/recherche/les-plate-formes/conservatoire-genetique-de-souris-sauvages/presentation/.

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