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Table 1 The mean number of segregating sites and estimates of synonymous and non-synonymous genetic diversity for each cluster across the seven genetic regions

From: Varying influences of selection and demography in host-adapted populations of the tick-transmitted bacterium, Anaplasma phagocytophilum

 

Synonymous sites

Non-synonymous sites

Cluster

Sites 1

SS 2

Ï€ 3

θ w 4

Sites 1

SS 2

Ï€ 3

θ w 4

1

95.6 (3.0)

11.1 (4.3)

0.0131 (0.0047)

0.0196 (0.0079)

315.4 (19.8)

5.4 (1.8)

0.0008 (0.0005)

0.0028 (0.0008)

2

95.6 (3.1)

11.4 (10.8)

0.0379 (0.0477)

0.0354 (0.0346)

315.4 (19.7)

2.7 (1.6)

0.0015 (0.0011)

0.0025 (0.0013)

3

96.3 (3.0)

1.6 (1.1)

0.0056 (0.0044)

0.0046 (0.0034)

314.7 (19.1)

0.9 (1.2)

0.0008 (0.0010)

0.0008 (0.0011)

  1. 1The average number of sites per genetic region that were classified as either synonymous or non-synonymous respectively.
  2. 2The average number of segregating sites across the seven genetic regions.
  3. 3The average pairwise difference per site [18,19].
  4. 4Watterson’s estimator of genetic diversity based on the number of segregating sites [20].
  5. () Standard deviations are indicated in parentheses.
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BMC Ecology and Evolution

ISSN: 2730-7182

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