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Table 2 Summary of significant results from likelihood models for amino acid sites under selection

From: Selection on MHC class II supertypes in the New Zealand endemic Hochstetter’s frog

 

SLAC

REL

MEME

Amino acid site

Normalized dN-dS

P-value

E[dN-dS]

Bayes Factor (dN > dS)

beta2

P-value

2

9.02

0.016

7.44

5111.36

14.88

0.004

11

  

7.46

1590.05

4.68

0.015

13

    

25.51

0.021

22

    

6.46

0.016

23

4.01

0.026

7.22

147.83

5.28

0.005

32

  

7.33

134.56

4.29

0.023

41

    

33.73

0.011

42

7.09

0.043

7.43

1743.83

73.74

<0.001

52

7.18

0.002

7.49

1.57E + 06

9.54

<0.001

55

6.34

0.042

7.48

3.02E + 06

  

56

    

73.31

<0.001

59

7.61

<0.001

7.53

1.68E + 06

8.85

<0.001

60

    

3.68

0.031

63

7.62

<0.001

7.53

6.83E + 05

9.40

<0.001

71

4.79

0.010

  

22.20

0.026

72

  

7.19

205.14

33.54

<0.001

73

    

4.71

0.028

  1. Amino acids with P-values <0.05 for SLAC/REL/MEME and Bayes Factor >100 for REL were considered to be under positive selection. Amino acid sites identified under selection from at least two models tested in bold.