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Table 2 Summary of significant results from likelihood models for amino acid sites under selection

From: Selection on MHC class II supertypes in the New Zealand endemic Hochstetter’s frog

  SLAC REL MEME
Amino acid site Normalized dN-dS P-value E[dN-dS] Bayes Factor (dN > dS) beta2 P-value
2 9.02 0.016 7.44 5111.36 14.88 0.004
11    7.46 1590.05 4.68 0.015
13      25.51 0.021
22      6.46 0.016
23 4.01 0.026 7.22 147.83 5.28 0.005
32    7.33 134.56 4.29 0.023
41      33.73 0.011
42 7.09 0.043 7.43 1743.83 73.74 <0.001
52 7.18 0.002 7.49 1.57E + 06 9.54 <0.001
55 6.34 0.042 7.48 3.02E + 06   
56      73.31 <0.001
59 7.61 <0.001 7.53 1.68E + 06 8.85 <0.001
60      3.68 0.031
63 7.62 <0.001 7.53 6.83E + 05 9.40 <0.001
71 4.79 0.010    22.20 0.026
72    7.19 205.14 33.54 <0.001
73      4.71 0.028
  1. Amino acids with P-values <0.05 for SLAC/REL/MEME and Bayes Factor >100 for REL were considered to be under positive selection. Amino acid sites identified under selection from at least two models tested in bold.