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Table 1 Plant GO slim enrichment of lost genes in Poaceae species

From: Identification and analysis of unitary loss of long-established protein-coding genes in Poaceae shows evidences for biased gene loss and putatively functional transcription of relics

Class Plant GO slim annotation Species Observed lost number Expected lost number Observed/Expected FDR-corrected pvalue
Shared by four species multicellular organismal development brachypodium 13 2.9 4.6 0.0000
   rice 6 0.9 6.7 0.0009
   sorghum 5 1.1 4.4 0.0133
   maize 6 1.4 4.4 0.0070
  cellular component organization brachypodium 13 2.9 4.5 0.0000
   rice 6 1.8 3.4 0.0135
   sorghum 5 1.1 4.7 0.0126
   maize 11 1.7 6.3 0.0000
Shared by three species post-embryonic development brachypodium 9 1.6 5.5 0.0001
   sorghum 4 0.7 6.1 0.0126
   maize 6 0.8 7.7 0.0006
  response to endogenous stimulus brachypodium 7 1.7 4.2 0.0037
   rice 4 0.6 7.1 0.0049
   maize 5 0.9 5.8 0.0060
Shared by two species anatomical structure morphogenesis brachypodium 12 1.1 11.2 0.0000
   rice 4 0.3 12.9 0.0009
  cell cycle brachypodium 5 0.4 11.3 0.0003
   sorghum 4 0.2 21.5 0.0004
Species-specific biosynthetic process brachypodium 15 8.3 1.8 0.0300
  cell differentiation brachypodium 8 0.6 12.4 0.0000
  cell growth brachypodium 4 0.6 6.7 0.0076
  embryo development brachypodium 5 0.6 8.6 0.0010
  flower development brachypodium 8 0.6 13.6 0.0000
  growth brachypodium 7 0.7 9.6 0.0000
  response to external stimulus brachypodium 7 1.7 4.0 0.0045
  sequence-specific DNA binding transcription factor activity brachypodium 7 1.9 3.6 0.0076
  carbohydrate metabolic process rice 5 0.9 5.8 0.0035
  transport maize 8 3.3 2.4 0.0412