Table 4 Partition schemes and models of substitution
8 partitions | 14 partitions | ||||
|---|---|---|---|---|---|
substitution model | included partitions | substitution model | included partitions | ||
1 | GTR + G | 12S, 16S; cytb (P1) | 1 | TIM2 + G | 12S |
2 | F81 + I | BDNF (P1), Rag1 (P1) | 2 | TIM2 + I + G | 16S |
3 | JC | BDNF (P2), SIA (P2) | 3 | TIM2 + I + G | cytb (P1) |
4 | K80 + G | BDNF (P3) | 4 | TPM2uf + G | cytb (P2) |
5 | K80 + I | RAG1 (P2), SIA (P1) | 5 | TIM1 + I + G | cytb (P3) |
6 | K80 + G | RAG1 (P3), SIA (P3) | 6 | GTR + I | RAG1 (P1) |
7 | HKY + G | cytb (P2) | 7 | TIM1 + I | RAG1 (P2) |
8 | TrN + I | cytb (P3) | 8 | HKY + I | RAG1 (P3) |
9 | TrNef | SIA (P1) | |||
4 partitions | 10 | JC | SIA (P2) | ||
1 | GTR + G | 12S, 16S, cytb (P1) | 11 | TPM2uf + G | SIA (P3) |
2 | JC + 1 | RAG1 (P1), RAG1 (P2) | 12 | K80 + G | BDNF (P1) |
3 | HKY + G | cytb (P2), RAG1 (P3) | 13 | JC | BDNF (P2) |
4 | TrN + I | cytb (P3) | 14 | JC | BDNF (P3) |