Scaffold | Position, bp | Strand | Length, bp | Predicted protein length, aa | ORF number in WSSV b | Protein in WSSV | Truncated ends | Frameshifts g | MAFFT alignment | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CN | TH | TW | Family c | Protein length | Function d | Pairwise identity, % | Alignment length, aa | ||||||||
I | 2,517-3,356 | - | 840 | 279 | 299 | 147 | 355 | 309 | 21.1 | 341 | |||||
I | 3,524-5,980 | + | 2,457 | 818 | 303 | 149 | 359 | 891 | TATA box binding protein (TBP) | 48.3 | 894 | ||||
I | 8,084-12,361 | - | 4,278 | 1,425 | 151 | 89 | 207 | 1,436 | Latency-related | 26.8 | 1,538 | ||||
I | 13,933-17,373 | + | 3,441 | 1,145 | 11 | 36 | 67 | 1,301 | VP53A, VP150 | E | 3’ | 41.2 | 1,326 | ||
I | 19,141-21,198 | + | 2,058 | 685 | 220 | 112 | 275 | 674 | VP674, VP76, class I cytokine receptor | C | 37.6 | 703 | |||
I | 22,400-24,835 | - | 2,436 | 811 | 172 | 92 | 228 | 848 | Ribonucleotide reductase large subunit (RR1) | 55.4 | 850 | ||||
I | 24,958-28,317 | + | 3,360 | 1,119 | 166 | 91 | 222 | (NA) | 1,072 | 35.0 | 1,166 | ||||
I | 29,688-35,294 | + | 5,607 | 1,868 | 447 | 9 | 507 | 1,936 | Helicase | 43.5 | 1,986 | ||||
I | 36,408-43,088 | + | 6,681 | 2,227 a | 143 | 84 | 198 | 2,314 | Poly | 22.9 | 2,509 | ||||
I | 43,108-44,328 | + | 1,221 | 406 | 188 | 98 | 243 | 413 | Ribonucleotide reductase small subunit (RR2) | 47.3 | 442 | ||||
I | 45,135-45,998 | + | 864 | 288 | (112) | (71) | (168) | 462 | dUTPase | 22.8 | 468 | ||||
I | 46,200-47,384 | - | 1,185 | 394 | 446 | 7 + 8 | 506 | 526 | 19.4 | 563 | |||||
I | 47,874-52,274 | + | 4,401 | 1,466 | 465 | 16 | 524 | 1,243 | VP136B | 19.3 | 1,546 | ||||
I | 52,821-55,352 | - | 2,532 | 843 | 45 | 43 | 102 | 981 | 35.1 | 1,020 | |||||
I | 55,376-58,807 | - | 3,432 | 1,143 | 37 | 42 | 94 | 1,279 | VP160B | C | 49.2 | 1,309 | |||
I | 59,002-61,614 | + | 2,613 | 870 | 119 | 73 | 175 | 1,044 | 32.8 | 1,084 | |||||
I | 61,759-62,034 | + | 276 | 91 | 35 | 41 | 92 | 972 | VP110 | E | 5’, fragment e | 50.0 i | 973 i | ||
II | 898-18,972 | - | 18,075 | 6,024 | 360 | 167 | 419 | 6,077 | VP664 | C | 50.6 | 6,221 | |||
II | 19,204-31,302 | + | 12,099 | 4,031 | 343 | 165 + 166 | 399 + 412 | 4,180 | 38.0 | 4,331 | |||||
II | 31,716-34,289 | + | 2,574 | 857 | 423 | 2 | 482 | 730 | Protein kinase 1 (PK1) | 35.0 | 888 | ||||
II | 34,316-34,906 | - | 591 | 196 | 421 | 1 | 480 | 204 | VP28 | E | 25.5 | 204 | |||
II | 35,421-38,787 | + | 3,367 | 1,120 a | 139 | 82 | 194 | 1,208 | STR | 39.8 | 1,247 | ||||
II | 38,756-39,691 | + | 936 | 311 | 137 | 81 | 192 | 337 | VP337 | 25.4 | 351 | ||||
II | 40,142-41,488 | - | 1,347 | 448 a | 131 | 77 | 186 | 484 | Poly | 33.4 | 495 | ||||
II | 41,511-42,371 | + | 861 | 286 | 133 | 78 | 188 | 271 | 33.4 | 302 | |||||
III | 561-848 | - | 288 | 95 | 21 | 37 | 77 | 200 | hr-binding protein | 5’; 3’ e | 15.7 | 204 | |||
III | 927-1,754 | - | 828 | 275 | 23 | 38 | 79 | 286 | 37.2 | 289 | |||||
III | 1,820-2,215 | - | 396 | 131 | 25 | 39 | 81 | 231 | 5’ e | 16.2 | 247 | ||||
III | 2,231-6,865 | - | 4,635 | 1,543 | 26 | 40 | 86 + 82 | 1,535 | VP507 | 50.2 | 1,590 | ||||
III | 8,195-11,185 | - | 2,991 | 996 | 226 | 114 | 281 | 936 | 27.2 | 1,074 | |||||
III | 11,727-14,753 | - | 3,027 | 1,008 | 192 | 100 | 247 | 1,019 | 44.8 | 1,051 | |||||
III | 14,831-15,739 | + | 909 | 302 | 191 | 99 | 246 | 311 | Endonuclease | 44.9 | 325 | ||||
III | 17,211-18,929 | - | 1,719 | 572 | 427 | 3 | 486 | 623 | Latency-related | 34.2 | 658 | ||||
III | 19,167-22,964 | + | 3,798 | 1,265 | 433 | 4 | 492 + 496 | 1,261 | 51.6 | 1,323 | |||||
III | 23,005-24,687 | + | 1,683 | 560 | 440 | 5 | 500 | 607 | 46.2 | 623 | |||||
III | 24,642-27,239 | + | 2,598 | 865 | 442 | 6 | 502 | 800 | VP800, VP95 | T | 30.4 | 895 | |||
III | 30,327-33,310 | - | 2,984 | 994 a | 64 + 63 | 53 | 121 + 120 | 843 | Poly | 16.4 | 1,099 | ||||
III | 38,213-40,172 | - | 1,960 | 653 | 277 | 135 | 332 | 791 | 31.6 | 807 | |||||
III | 40,595-44,461 | - | 3,867 | 1,289 | 271 | 134 | 326 | 1,219 | VP136A | C | Poly | 36.1 | 1,348 | ||
III | 44,426-44,971 | + | 546 | 181 | 270 | 133 | 325 | 170 | 34.2 | 190 | |||||
III | 44,938-46,377 | + | 1440 | 479 | 269 | 132 | 324 | 489 | VP53c | 53.9 | 505 | ||||
III | 46,469-47,209 | + | 741 | 246 | 267 | 131 | 321 | 281 | 28.1 | 281 | |||||
III | 47,325-49,637 | + | 2,313 | 770 | 260 | 130 | 315 | 922 | VP387 | 25.3 | 965 | ||||
III | 50,920-52,581 | - | 1,662 | 553 | 1 | 30 | 52 | 1,684 | VP1684, collagen | E | 23.5 i | 613 i | |||
III | 52,725-55,115 | - | 2,391 | 796 | 332 | 160 | 388 | 786 | VP75 | 38.2 | 824 | ||||
III | 55,224-57,680 | + | 2,457 | 818 | 327 | 159 | 383 | 856 | VP90 | E | 40.1 | 872 | |||
III | 58,441-59,865 | + | 1,425 | 473 | 147 | 85 | 202 | 459 | 19.8 | 515 | |||||
III | 62,523-63,143 | - | 621 | 206 | 419 | (NA) | 478 | 193 | 31.9 | 210 | |||||
III | 62,963-64,516 | - | 1,554 | 517 | 415 | 183 | 474 | 544 | VP544, VP60 § | C | 43.0 | 547 | |||
III | 64,652-65,005 | + | 354 | 117 | 414 | 182 | 473 | 121 | VP19 | E | 39.3 | 122 | |||
III | 65,332-65,604 | + | 273 | 90 | 324 | 157 | 380 | 82 | 31.3 | 98 | |||||
III | 65,906-66,142 | - | 237 | 78 | 322 | 156 | 378 | 227 | 5’, 3’; fragment | 16.1 i | 227 i | ||||
III | 66,363-66,752 | - | 390 | 129 | 321 | 155 | 377 | 117 | VP13B, VP16 | E | 39.5 | 129 | |||
III | 66,908-69,883 | + | 2,976 | 991 | 313 | 154 | 369 | 1,179 | 29.9 | 1,224 | |||||
III | 69,974-70,567 | + | 594 | 197 | 311 | 153 | 367 | 204 | VP26 | T | 28.2 | 206 | |||
III | 70,645-71,418 | - | 774 | 257 | 310 | 152 | 366 | 272 | 33.0 | 277 | |||||
III | 71,415-72,818 | - | 1,404 | 467 | 308 | 151 | 364 | 466 | VP466, VP51 | C | 44.4 | 480 | |||
III | 72,809-73,111 | - | 303 | 100 | 306 | 150 | 362 | 419 | VP39A | T | 5’ e | 10.8 | 435 | ||
III | 73,422-75,302 | + | 1,881 | 626 | 282 | 140 | 337 | 634 | 54.1 | 658 | |||||
III | 75,443-77,426 | + | 1,984 | 660 a | 161 | 90 | 217 | 759 | Poly | 29.8 | 786 | ||||
III | 77,503-84,399 | + | 6,897 | 2,298 | 514 | 27 | 39 | 2,351 | DNA polymerase | 55.0 | 2,409 | ||||
III | 84,915-86,372 | + | 1,458 | 485 | no homology | Inhibitor of apoptosis protein | |||||||||
III | 86,662-87,348 | - | 687 | 228 | 295 | 146 | 351 | 209 | 23.6 | 267 | |||||
III | 87,428-87,922 | - | 495 | 164 | 294 | 145 | 350 | 206 | 17.6 | 216 | |||||
III | 88,010-88,258 | + | 249 | 82 | 293a | 144 | 349 | 97 | VP14 | 5’ ef | 55.3 | 97 | |||
III | 88,215-92,825 | + | 4,611 | 1,536 | 289 | 143 | 344 | 1,564 | VP160A, VP190 | C | 38.1 | 1,627 | |||
III | 93,236-96,400 | - | 3,165 | 1,054 | 285 | 142 | 340 | 1,100 | 36.9 | 1,116 | |||||
III | 96,852-98,046 | - | 1,195 | 398 a | 78 | 59 | 135 | 398 | hr-binding protein | Poly | 20.9 | 460 |