Table 1 RNA-Seq data and cross mapping result
Sample | PS type | # read | Average length | # mapping read | % mapping read | # target CDS | % mapping target |
|---|---|---|---|---|---|---|---|
Pair-end RNA-seq of from Illumina, read length: 75–90 bp (from 1KP) | |||||||
F. cronquistii-j | a | 16,809,686.00 | 90 | 7,902,191.00 | 47.01 % | 25,692.00 | 72.60 % |
F. cronquistii-m | a | 15,622,832.00 | 90 | 8,114,254.00 | 51.94 % | 25,337.00 | 71.60 % |
F. pringlei-j | a | 20,064,474.00 | 90 | 9,372,051.00 | 46.71 % | 26,209.00 | 74.07 % |
F. pringlei-m | a | 16,219,108.00 | 90 | 9,150,289.00 | 56.42 % | 25,308.00 | 71.52 % |
F. angustifolia-j | b | 16,668,010.00 | 90 | 7,983,526.00 | 47.90 % | 25,599.00 | 72.34 % |
F. angustifolia-m | b | 18,085,350.00 | 90 | 9,059,885.00 | 50.10 % | 24,877.00 | 70.30 % |
F. pubesens-j | b | 18,897,990.00 | 90 | 11,118,929.00 | 58.84 % | 25,933.00 | 73.29 % |
F. pubesens-m | b | 20,703,102.00 | 90 | 8,502,290.00 | 41.07 % | 25,438.00 | 71.89 % |
F. sonorensis-j | b | 22,424,194.00 | 90 | 11,170,838.00 | 49.82 % | 25,959.00 | 73.36 % |
F. palmeri-j | c | 19,329,884.00 | 90 | 10,666,300.00 | 55.18 % | 25,669.00 | 72.54 % |
F. vaginata-j | c | 18,876,338.00 | 90 | 8,830,209.00 | 46.78 % | 25,814.00 | 72.95 % |
F. bidentis-j | d | 25,424,874.00 | 90 | 13,020,754.00 | 51.21 % | 26,103.00 | 73.77 % |
F. bidentis-m | d | 23,089,000.00 | 90 | 12,163,057.00 | 52.68 % | 25,582.00 | 72.29 % |
F. kochiana-m | d | 19,220,058.00 | 90 | 10,881,823.00 | 56.62 % | 25,359.00 | 71.66 % |
F. trinervia-j | d | 23,726,482.00 | 90 | 11,295,399.00 | 47.61 % | 26,442.00 | 74.72 % |
F. trinervia-m | d | 27,345,748.00 | 90 | 13,030,756.00 | 47.65 % | 25,665.00 | 72.53 % |
H. autumnale | a | 25,213,280.00 | 90 | 7,916,909.00 | 31.40 % | 26,039.00 | 73.59 % |
Ta. parthenium | a | 19,828,848.00 | 75 | 5,069,369.00 | 25.57 % | 26,041.00 | 73.59 % |
Tr. duius | a | 23,106,402.00 | 90 | 9,485,525.00 | 41.05 % | 26,235.00 | 74.14 % |
Average | 20,560,824.20 | 47.67 % | 73.78 % | ||||
Single-end RNA-seq from Illumina, read length: 100 bp from (HHU). | |||||||
F. pringlei # | a | 38,529,805.00 | 90.1 | 20,920,082.00 | 54.30 % | 28,605.00 | 80.84 % |
F. robusta # | a | 33,113,842.00 | 90.1 | 9,625,516.00 | 29.07 % | 29,033.00 | 82.05 % |
F. angustifolia # | b | 31,408,476.00 | 85.1 | 14,328,304.00 | 45.62 % | 28,533.00 | 80.63 % |
F. anomala # | b | 31,056,596.00 | 91.1 | 15,457,407.00 | 49.77 % | 26,676.00 | 75.39 % |
F. chloraefolia # | b | 39,911,614.00 | 89.9 | 18,468,621.00 | 46.27 % | 28,375.00 | 80.19 % |
F. floridana # | b | 38,236,849.00 | 84.9 | 18,685,391.00 | 48.87 % | 28,465.00 | 80.44 % |
F. pubescens # | b | 29,940,352.00 | 91.4 | 15,965,038.00 | 53.32 % | 28,957.00 | 81.83 % |
F. ramosissima # | b | 35,283,647.00 | 90.4 | 20,060,016.00 | 56.85 % | 29,010.00 | 81.98 % |
F. brownii # | c | 43,802,834.00 | 91.6 | 20,986,495.00 | 47.91 % | 28,180.00 | 79.64 % |
F. palmeri # | c | 27,804,586.00 | 84 | 12,421,541.00 | 44.67 % | 28,926.00 | 81.74 % |
F. vaginata # | c | 35,000,281.00 | 84 | 16,077,619.00 | 45.94 % | 28,772.00 | 81.31 % |
F. australasica # | d | 25,312,995.00 | 84.1 | 10,357,274.00 | 40.92 % | 27,387.00 | 77.40 % |
F. bidentis # | d | 34,333,242.00 | 90.9 | 16,600,362.00 | 48.35 % | 27,731.00 | 78.37 % |
F. trinervia # | d | 33,540,674.00 | 91.2 | 19,511,743.00 | 58.17 % | 29,059.00 | 82.12 % |
Average | 34,091,128.00 | 47.86 % | 0.815 | ||||
F. bidentis # -root | 34,491,406.00 | 91.8 | 16,020,332.00 | 46.45 % | 28,180.00 | 79.68 % | |
F. bidentis # -shoot | 36,588,034.00 | 91.3 | 17,261,488.00 | 47.18 % | 28,465.00 | 80.48 % | |
F. robusta # -root | 38,514,685.00 | 91.8 | 17,220,911.00 | 44.71 % | 28,772.00 | 81.35 % | |
F. robusta # -shoot | 23,089,000.00 | 90 | 12,163,057.00 | 52.68 % | 25,582.00 | 72.33 % | |
Average | 20,440,345.00 | 47.64 % | 78.46 % | ||||