Convergent evolution of highly reduced fruiting bodies in Pezizomycotina suggests key adaptations to the bee habitat
© Wynns. 2015
Received: 24 October 2014
Accepted: 1 June 2015
Published: 21 July 2015
Among the understudied fungi found in nature are those living in close association with social and solitary bees. The bee-specialist genera Bettsia, Ascosphaera and Eremascus are remarkable not only for their specialized niche but also for their simple fruiting bodies or ascocarps, which are morphologically anomalous in Pezizomycotina. Bettsia and Ascosphaera are characterized by a unicellular cyst-like cleistothecium known as a spore cyst, while Eremascus is characterized by completely naked asci, or asci not formed within a protective ascocarp. Before molecular phylogenetics the placement of these genera within Pezizomycotina remained tentative; morphological characters were misleading because they do not produce multicellular ascocarps, a defining character of Pezizomycotina. Because of their unique fruiting bodies, the close relationship of these bee-specialist fungi and their monophyly appeared certain. However, recent molecular studies have shown that Bettsia is not closely related to Ascosphaera.
In this study, I isolated the very rare fungus Eremascus fertilis (Ascomycota, Pezizomycotina) from the bee bread of honey bees. These isolates represent the second report of E. fertilis both in nature and in the honey bee hive. To establish the systematic position of E. fertilis and Bettsia alvei, I performed phylogenetic analyses of nuclear ribosomal LSU + SSU DNA sequences from these species and 63 additional ascomycetes.
The phylogenetic analyses revealed that Eremascus is not monophyletic. Eremascus albus is closely related to Ascosphaera in Eurotiomycetes while E. fertilis belongs in Myxotrichaceae, a putative member of Leotiomycetes. Bettsia is not closely related to Ascosphaera and like E. fertilis apparently belongs in Leotiomycetes. These results indicate that both the naked ascus and spore cyst evolved twice in the Pezizomycotina and in distantly related lineages. The new genus Skoua is described to accommodate E. fertilis.
The naked ascus and spore cyst are both shown to have evolved convergently within the bee habitat. The convergent evolution of these unusual ascocarps is hypothesized to be adaptive for bee-mediated dispersal. Elucidating the dispersal strategies of these fungal symbionts contributes to our understanding of their interaction with bees and provides insight into the factors which potentially drive the evolution of reduced ascocarps in Pezizomycotina.
KeywordsAscosphaerales Eremascaceae Honey bees Solitary bees Yeasts Skoua
The Ascomycota are an ecologically diverse group of fungi characterized by the production of meiospores in sac-like structures called asci. In the subphylum Pezizomycotina, asci are formed within a protective ascocarp, while in the basal lineages (Saccharomycotina and nearly all members of Taphrinomycotina) asci lack a protective covering and are called naked asci. Four major multicellular ascocarp types are recognized in the Ascomycota: apothecia (cup-shaped ascocarps with an exposed hymenium), perithecia (flask-shaped ascocarps with a pore through which ascospores are released), pseudothecia (ascocarps with asci contained in numerous locules), and cleistothecia (entirely closed ascocarps with no predefined opening and no regular arrangement of asci) [1, 2]. The traditional classification system of Pezizomycotina (Ascomycota) placed great emphasis on these ascocarp types. Subsequently, DNA sequence-based phylogenies have shown that similar ascocarp types have evolved multiple times in distantly related lineages [3, 4]. As more sequence data become available, it is increasingly clear that morphological convergence of ascocarp types is not uncommon, and that the evolution of ascocarps and modes of ascus and ascocarp dehiscence are frequently associated with common spore dispersal strategies [5, 6, 4].
Phylogenetic studies have identified the major lineages shaping the backbone of the fungal tree of life [7, 8, 4] but the placement of many taxa at and below the class level remains uncertain. Increased DNA sampling of understudied groups, especially those whose systematic placement is based on morphology, may be critical for enabling ancestral-state reconstructions of characteristics such as ascus-dehiscence type, ascocarp ontogeny, and lifestyle and spore dispersal strategies.
Recent phylogenetic studies [21, 22] suggest that spore cysts have evolved at least twice and that Bettsia is more closely related to the class Leotiomycetes than to Ascosphaeraceae (Eurotiomycetes). Earlier phylogenetic studies supported a monophyletic Ascosphaeraceae; however, these studies included just two representatives of the family – Ascosphaera apis (Claussen) L.S. Olive & Spiltoir and A. atra Skou & K. Hackett (as A. apis in Berbee et al. 1995) – and not Bettsia [23, 24]. Because of the striking similarity of the ascocarps in Bettsia and Ascosphaera, and their shared predilection for the bee habitat, the position of B. alvei (Betts) Skou in the Leotiomycetes and the polyphyly of Ascosphaeraceae were formerly unsuspected. The affinity of the monotypic genus Arrhenosphaera to Ascosphaeraceae is based on the shared character of a spore cyst. Unfortunately, no holotype was designated in the protologue of Arrhenosphaera cranei Stejskal  and no additional collections or reports of the fungus have been made since its description as a problematic pathogen of honey bees in Venezuela in 1974.
The placement of Ascosphaeraceae in Eurotiales (Eurotiomycetidae) is based on similar early sexual development in Monascus and Aspergillus [17, 25], and is supported by DNA sequence-based phylogenies [3, 24]. These phylogenies also revealed a close relationship between Ascosphaeraceae and Eremascaceae, a family of just one genus, Eremascus. Ascosphaeraceae and Eremascus both lack hyphal fruiting bodies and for this reason were loosely referred to as ‘yeasts’ . The shared simple ascocarp morphology of these two taxa was recognized before molecular data became available but their possible relatedness was doubted because of differences in their sexual systems [25, 27].
The genus Eremascus includes two species, E. fertilis Stoppel and E. albus Eidam, and is characterized by naked asci and a predilection for high sugar substrates . Naked asci, with no interspersed sterile hyphae, occur elsewhere only within the early diverging lineages of the Ascomycota: the yeast-like Taphrinomycotina and the true-yeasts, Saccharomycotina . The morphological similarity of Eremascus to the yeast-like fungi led some authors to believe that Eremascus should be placed among the Saccharomycetales, noting that the genus differs from other members of this group only in lacking asexual reproduction by budding or otherwise [30, 19]. Despite its unique fruiting body type within the Pezizomycotina, Eremascus has received little attention in phylogenetic studies. The prevailing view has been that Eremascus is monophyletic [31, 28], and its closest relative is Ascosphaeraceae [24, 32, 26]. The supposed monophyly of the genus is based on the shared character of completely naked asci, while the two species (E. fertilis and E. albus) differ in ascospore morphology and sexual development [27, 33].
Both Eremascus species are xerophiles thriving in conditions where water activity is low and solute concentrations are high . The natural habitat of Eremascus remains elusive; both species are very rarely collected and have previously been isolated only from various high-sugar foods such as prunes, preserved fruit, shortcake, plum jam, mincemeat, honeycomb and on pollen [28, 34, 35]. In the process of studying the diversity of spore cyst fungi in the nests of solitary bees and in the hives of honey bees in Denmark, Eremascus fertilis was serendipitously isolated from the beebread of honey bee hives. This is the second report of E. fertilis in nature: the first report was in 1912 when A. Betts also observed the fungus growing on pollen in honey bee hives .
Eremascus fertilis has not previously been included in phylogenetic studies at the class level. In this study, I sequenced the large subunit (LSU) and small subunit (SSU) nuclear ribosomal DNA regions for E. fertilis and also for Bettsia alvei. These sequences were added to a large matrix of sequences from other Ascomycota, which was then analyzed both by maximum parsimony and Bayesian inference. Based on the resulting phylogenies, a theory for the adaptive significance of the spore cyst and naked ascus within the bee habitat is proposed.
Spore cysts and asci were mounted in water on glass slides. Light photomicrographs were made on an Olympus AX70 Provis light microscope. Herbarium acronyms follow those of Index Herbariorum  .
Ninety-six solitary bee nests were placed at eight localities on the island of Sjælland, Denmark. The nest holes ranged from 6 to 9 mm in diameter (to attract different species of cavity-nesting bees) and had a length of 19.5 cm. The nests were placed 1–2.5 meters above the ground on the sides of buildings or below eaves with the entrances positioned to face southeast. Nests were opened and inspected annually from 2008 to 2012. Fungi growing on the pollen provisions, larvae, cocoons and nesting material were removed from a subset of the nests and identified. Overwintered honey bee (Apis mellifera) frames containing bee bread were collected in 2010 from three managed hives in Sjælland, Denmark. Bee bread with fungal growth resembling a spore cyst fungus was removed and the fungi isolated.
Isolation and cultivation
Collection information for new isolates of Bettsia alvei and Skoua fertilis
Habitat & substrate
honey bee comb; bee bread
brood cell of Osmia bicornis; pollen
honey bee comb; bee bread
honey bee comb; bee bread
For two strains of Eremascus fertilis and two strains of Bettsia alvei (Table 1), genomic DNA was obtained by picking up ascocarps and mycelium from isolate cultures and grinding them inside a 1.5 ml Eppendorf tube. DNA was then isolated using the Qiagen DNeasy Plant Mini Kit (Hilden, Germany) using the standard protocol and eluted in two separate 50 μl fractions to avoid over-dilution.
The LSU and SSU regions were each amplified by PCR. Primers LR0R and LR7  were used to amplify 1.4 kb of LSU, and primers NS1 and NS4  were used to amplify 1.1 kb of SSU. PCR reactions were prepared in 50 μl volumes containing 29.8 μl of sterile deionized water, 5 μl of Taq polymerase reaction buffer (Sigma®), 1.0 μl 10 mM dNTP, 3.0 μl 25 mM MgCl2, 0.2 μl Taq DNA polymerase (Sigma®), 5.0 μl each 10 μM primer and 1 μl of genomic DNA template. PCR was performed on a Biometra® thermocycler (Whatman) under the following conditions: for LSU: step 1) 1 min at 95 °C, 2) 1 min at 94 °C, 3) 30 sec at 51 °C, 4) 1 min at 72 °C, 5) return to step 2 34 times, 6) final step of 10 min at 72 °C; and for SSU: step 1) 1 min at 95 °C, 2) 1 min at 94 °C, 3) 30 sec at 51 °C, 4) 1 min at 72 °C, 5) 1 min at 94 °C, 6) 30 sec at 53 °C, 7) 65 sec at 72 °C, 8) return to step 2 34 times, 9) final step of 10 min at 72 °C. Samples were kept at 4 °C until electrophoresis was performed on 1 % agarose TAE gels and visualized with EZvision One® (Amresco). PCR products were cleaned using the Qiaquick® PCR purification kit (Qiagen) and were sent to Eurofins MWG Operon AG (Ebersberg, Germany) for sequencing. In addition to the amplification primers, LSU was sequenced with primers LR3R and LR5 , and SSU with primers NS2  and SR7R (http://sites.biology.duke.edu/fungi/mycolab/primers.htm). Sequences were assembled using BioEdit .
Isolates and/or voucher specimens and GenBank accession numbers for LSU and SSU sequences
GenBank ID/Sequence source
ATCC 16855/ FGSC4
AA Wynns 5065 (C)
AA Wynns 5158 (C)
W. Untereiner WUC28
F. M. Lutzoni 01-26-03.2
Endocarpon cf. pusillum
S. Joneson 4028
Eremascus (Skoua) fertilis
AA Wynns 5159 (C)
Eremascus (Skoua) fertilis
AA Wynns 5160 (C)
W. Untereiner WUC 137
James et al. 2006 
James et al. 2006 
The predominant bee species in the solitary bee nests were Osmia bicornis, O. leaiana and Megachile centuncularis and M. versicolor. Details of the contents of individual cells were recorded for 1553 of the approximately 8000 brood cells observed. Of 1553 brood cells, 1429 contained cocoons, 80 contained uneaten pollen provisions, and 182 had spore cysts on the pollen provisions, brood cell building materials, larval feces, larvae, or on the cocoon surface. Eighteen brood cells contained chalkbrood caused by Ascosphaera. Thirty-five of the 80 brood cells containing uneaten pollen provisions had Bettsia and Ascosphaera growing on and between the pollen grains. Bettsia and Eremascus were found growing on the beebread of honey bee frames from two different localities (Table 1).
Phylogenetic relationships of Eremascus and Bettsia
The LSU matrix used for analysis included 862 characters, and the SSU matrix 1691 characters; the combined file thus included 2553 characters, of which 1762 were constant, 191 were variable but not parsimony-informative, and 600 were parsimony-informative. Two equally most-parsimonious trees of 3716 steps were recovered: a phylogram of one of these trees is shown in Fig. 3. Topologically, the parsimony and Bayesian trees [see Additional file 1] were similar to those of previous studies [8, 4] based on more regions. The analysis of the combined dataset placed Eremascus fertilis in a well-supported clade (bootstrap [BS] = 87; posterior probability [PP] = 1) with Byssoascus striatosporus (G.L. Barron & C. Booth) Arx and Myxotrichum deflexum Berk. Eremascus albus, the type species of the genus, was resolved in Eurotiomycetes, sister to Ascosphaera (BS = 82, PP = 1). Bettsia belonged to a fully supported clade including the leotiomycete genera Pseudogymnoascus, Leuconeurospora and Pseudeurotium. Although the Leotiomycetes clade did not receive statistical support, the Eurotiomycetes clade was well supported (BS = 95, PP = 1).
Eremascus is a polyphyletic taxon. A new genus is needed for E. fertilis which is evidently related to Myxotrichum and Byssoascus. The placement of E. fertilis with Myxotrichaceae is supported morphologically by its narrow ellipsoid ascospores and uncoiled suspensors resembling stipitate asci (Fig. 2b-c). Narrow ascospores and stipitate asci are characteristic of Myxotrichaceae but are anomalous in the Onygenales (Eurotiomycetes), where E. fertilis was formerly placed .
The placement of Bettsia alvei in Leotiomycetes (Fig. 3) agrees with recent studies [21, 22]. Thus, Ascosphaeraceae as traditionally understood is also polyphyletic and the family must be circumscribed more narrowly to include Ascosphaera and Arrhenosphaera, but not Bettsia. Bettsia is most closely related to Pseudeurotium, Pseudogymnoascus and Leuconeurospora in the family Pseudeurotiaceae. The cleistothecium of Pseudeurotium is formed by a cellular peridium  rather than a double membrane as in a spore cyst, and the ascomal ontogeny of Pseudeurotium  is markedly different from that of a spore cyst [49, 50]. However, Pseudeurotium and Bettsia are similar in that they both have prototunicate asci and globose ascospores.
Skoua A.A. Wynns, gen. nov.
Index Fungorum: IF551198
Type. Skoua fertilis (Stoppel) A.A. Wynns
Ascomata absent. Asci borne laterally from undifferentiated hyphae, prototunicate, subglobose, stipitate-like from two suspensors. Ascospores ellipsoid, smooth, hyaline.
The generic name Skoua commemorates the Danish bee pathologist J. P. Skou, in acknowledgement of his major contribution to our understanding of spore cyst fungi.
Skoua fertilis (Stoppel) A.A. Wynns, comb. nov. Fig. 2a–e
Index Fungorum: IF551199
Basionym. Eremascus fertilis Stoppel, Flora 97: 332. 1907.
Neotype of Eremascus fertilis (here designated): DENMARK: Zealand, Frederiksværk. Isolated from overwintering bee bread of Apis mellifera hive 74 belonging to Christian Pedersen, collected by A.A. Wynns 5159 (C). Index Fungorum: IF551197
Naked asci subglobose, 9–12 μm, on average 11 μm. Ascospores 4–8 × 3–5 μm. Natural habitat on beebread inside the nests of Apis mellifera. In vitro growth at 18 °C, a low white mycelium on MY20, pale buff and radially sulcate with age (Fig. 2a), with abundant asci after four weeks. Conidia not observed.
Notes—In his description of E. fertilis, Stoppel  did not explicitly designate a holotype for this species; therefore, the ex-culture specimen A.A. Wynns 5159 deposited in herbarium C is here designated as the neotype.
Convergent evolution of reduced fruiting bodies
Peridia, or the protective structures enclosing asci and ascospores, are diverse among the cleistothecial fungi. Peridia range from completely closed structures composed of many cells (e.g., Pseudeurotium), to cottony or cage-like enclosures of hyphae (e.g., Byssochlamys, Myxotrichum, Gymnoascus), to simple hyphae interspersed among naked asci and not forming an enclosure (e.g., Byssoascus). The morphology of the peridium was once thought to indicate relatedness  but hyphal or mesh-like peridia, cephalothecoid peridia, and now membranous peridia are known to have independently evolved in unrelated lineages and in taxa associated with insects [4, 5].
The results of the phylogenetic analyses (Fig. 3) unambiguously show that Eremascus fertilis is excluded from the class Eurotiomycetes and is not closely related to the type species of the genus, E. albus. Eremascus fertilis is therefore transferred to the new genus Skoua. This genus is closest to Myxotrichacaeae, a family formerly placed in Eurotiomycetes but now considered to be a member of Leotiomycetes based on nrDNA-based phylogenies [45, 52]. Derived naked asci thus evolved at least twice within the Pezizomycotina: once in Eremascus (Eurotiomycetes) and once in Skoua (Leotiomycetes). Completely naked asci (i.e.,without any vestigial peridial hyphae) occur elsewhere only in the basal lineages of Ascomycota (Taphrinomycotina and Saccharomycotina) . Unlike the yeasts and yeast-like filamentous fungi (e.g. Symbiotaphrina, Aureobasidium), asexual reproduction by budding, fission, or otherwise does not occur in Eremascus and Skoua; therefore, the only yeast-like character of Skoua and Eremascus is naked asci.
Several taxa in Pezizomycotina (e.g., Byssochlamys, Gymnoascus, Pseudogymnoascus, Myxotrichum, Eleutherascus, Ascodesmis) produce nearly naked asci that are enclosed by or interspersed with a loose network of hyphae (Fig. 3) known as a telaperidium or a reticuloperidium. Telaperidial and reticuloperidial ascomata are interpreted as loosely arranged cleistothecia or apothecia, a derived condition . Interestingly, Eremascus albus and Skoua fertilis are allied to telaperidial and reticuloperidial taxa in both Eurotiomycetes (e.g., Byssochlamys, Gymnoascus) and Leotiomycetes (e.g., Myxotrichum, Byssoascus) (Fig. 3). More sequence data are needed to determine if the naked ascus in S. fertilis evolved by reduction from a reticuloperidium or if reticuloperidial taxa evolved from Skoua-like ancestors. Reduced fruiting bodies are also found in Ascodesmis and Eleutherascus in Pezizomycetes, the most basal clade of the Pezizomycotina. In Ascodesmis the fruiting body consists of a bundle of naked asci.
Morphological convergence and dispersal
The discovery that the spore cyst and the naked ascus have each evolved twice in unrelated lineages of bee-associated fungi suggests that these reduced fruiting bodies are well adapted to the bee habitat. Convergent evolution of fruiting body types and ascus types in unrelated fungi with similar dispersal strategies has occurred repeatedly in the Pezizomycotina, e.g., ascomata with reticuloperidial or cephalothecoid peridia [5, 54–56]. Evanescent asci or asci which break down to release the ascospores passively evolved mutiple times in the Ascomycota and are correlated with insect dispersal [4, 57]. Similarly, the fragile peridium of the spore cyst fungi Ascosphaera and Bettsia and the evanescent naked asci of Skoua and Eremascus are interpreted as adaptive for dispersal by bees. Spore cysts break down when touched and dehisce with the activity of the bees, for example as bees move over and chew through the contents of brood cells in the process of emergence from their natal nests and during routine maintenance and construction of brood cells [58, 25, 59]. Disrupting the spore cyst membrane and subsequently picking up spores during emergence is a major contributor to the spread of chalkbrood in the managed solitary bee Megachile rotundata . As the spore cysts are broken open, a sticky mucilage on the ascospores of Bettsia and Ascosphaera further ensures dispersal by the bee host [58, 25].
In this study, the peridia or membranous spore cyst walls of Ascosphaera and Bettsia growing within the nests of solitary bees remained intact in overwintering bee nests and in the absence of nesting activity. This is reminiscent of the spore dispersal strategy of Myxomycetes living in sheltered habitats. The peridium of Myxomycetes is dependent on the movement of invertebrates to disrupt the membrane, while in the absence of invertebrates the peridium remains intact for months .
The diversity and abundance of the spore cyst fungi is greater in the nests of solitary bees than in eusocial bees. The combination of the lack of social grooming and the nesting habits of solitary bees may contribute to the diversity and abundance of spore cyst fungi within the nests of these bees. In contrast to eusocial bees (e.g., honey bees), which may be active for months, solitary bees in temperate regions usually have only one generation per year and a relatively brief nesting and active period, sometimes as short as three weeks . These nesting habits provide a stable environment for the slow-growing spore cyst fungi to establish and to develop mature ascocarps. On the other hand, because the active period of solitary bees is short compared with their eusocial relatives, the period for successful ascospore dispersal is much reduced. Ascospore release, coupled with the activity of the bees, maximizes spore dispersal of the fungus specifically by its host. Ensuring that ascospore release occurs in conjunction with the activity of the bees is particularly adaptive in the solitary bee habitat where the linear arrangement of brood cells means that siblings must pass through other brood cells to emerge from the nest (Fig. 1c–d).
Bee-mediated dispersal may be particularly critical for the spore cyst fungi and for Eremascus and Skoua because of their physiological requirements as xerophiles. Eremascus and Bettsia are included among the few xerophilic fungi called extreme xerophiles, meaning that they require rather than prefer a substrate with low water activity . The bee habitat is a temporally static micro-environment that provides low water activity substrates, e.g., honey, bee bread, and pollen provisions, on which these slow growing xerophiles are able to thrive. A habitat with the combination of a temporally static environment and a provision of low water activity substrates is undoubtedly uncommon in nature and possibly unique to the nests of bees.
Microbial symbionts in bee nests and within the bees themselves may play a major role in maintaining bee health and in disease defense [64–67]. However, characterization of the microbial community in even the best-studied bee system, the honey bee, remains understudied, and its beneficial potential poorly understood . Even less is known about the fungi intimately associated with the many species of solitary bees that make up the majority of the 20,000 bee species ; the literature is sparse  and the subject almost entirely unexplored. Understanding the phylogenetic relationships of resident fungi within bee nests and their dispersal strategies may help to elucidate the role of these organisms in the bee habitat.
In this study, the systematic relationships of the bee specialist fungi are clarified and the monotypic genus Skoua is added to the microbial community associated with bees. The convergent evolution of spore cysts in Bettsia and Ascosphaera, and of naked asci in Eremascus and Skoua, is proposed to be adaptive for spore dispersal in the bee habitat. A taxonomic framework is provided for future studies of the understudied fungi occurring in this highly specialized niche.
Availability of supporting data
Funding for the project was provided by the University of Copenhagen and the Danish National Research Foundation.
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